View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_14 (Length: 513)
Name: NF9060_low_14
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 9151256 - 9151742
Alignment:
| Q |
17 |
cataaacacttatatgataca-gcttatgtcatatacttnnnnnnngcgattatgctaaaacttatactcccttctatcaatt-atatataatttacttc |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||| |
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| T |
9151256 |
cataaacacttatatgatacatgcttatgtcatatacttaaaaaaagcgattatgctaaaacttatactcctttatatcaatttatatataattttcttc |
9151355 |
T |
|
| Q |
115 |
aatataatggtctggtaggcctnnnnnnncttttttatgacttttgatctatgcttgttagctaaataggctaggcttatataaaagccttaacattctc |
214 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9151356 |
aatataatggtctggtaggtctaaaaaaacttttttatgacttttgatctatgcttgttagctaaataggctaggcttatataaaagccttaacattctc |
9151455 |
T |
|
| Q |
215 |
tatttaaaaaa-caataagtctgattagtgcttaacttatgctaggccgtaagctcctgtaaacagttttgacctattcccacctacttgagagttacca |
313 |
Q |
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| T |
9151456 |
tatttttttgagcaataagtctgattagtgcttaacttatgctaggccgtaggctcctgtaaacagttttgacctattcccacctacttgagaggtacca |
9151555 |
T |
|
| Q |
314 |
tccatgcgcacctaaattttttctcaacnnnnnnnnn----gaacgattctactaataagtcattcaaccttttaaaagccatttgccttaaatgtttgt |
409 |
Q |
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|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9151556 |
tcca--cgcacctaaatttttcctcaacaaaaaaaaaaaaagaacgattctactaataagtcattcaaccttttaaaagccatttgccttaaatgtttgt |
9151653 |
T |
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| Q |
410 |
aaatcacagtctttttagcttggctagaggcttagtacaacgtttagcttcatatacttctttcctttgtttattttataagatctgtg |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9151654 |
aaatcacagtctttttagcttggctagaggcttagtacaacgcttagcttcatatacttctttcctttgtttattttataagatctgtg |
9151742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 38 - 334
Target Start/End: Complemental strand, 9177096 - 9176802
Alignment:
| Q |
38 |
gcttatgtcatatacttnnnnnnngcgattatgctaaaacttatactcccttctatcaattatatataatttacttcaatataatggtctggtaggcctn |
137 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9177096 |
gcttatgtcatatacttaaaaaaagcgattatgctaaaacttatactcccttctatcaattttatataatttacttcaatataatggtctggtaggccta |
9176997 |
T |
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| Q |
138 |
nnnnnncttttttatgacttttgatctatgcttgttagctaaataggctaggcttatataaaagccttaacattctctatttaaaaaacaataagtctga |
237 |
Q |
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| T |
9176996 |
aaaaaacttttttatgacttttgatctatgcttgttagctaaataggctaggcttatataaaagccttaacattctctatttaaaaaacaataagtctga |
9176897 |
T |
|
| Q |
238 |
ttagtgcttaacttatgctaggccgtaagctcctgtaaacagttttgacctattcccacctacttgagagttaccatccatgcgcacctaaattttt |
334 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
9176896 |
ttagtgcttaacttatgctaggccgtaggctcctgtaaacagttttgacctattcccacctaattgagaggtaccatcca--cgcacctaaattttt |
9176802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Complemental strand, 9176804 - 9176776
Alignment:
| Q |
470 |
tttcctttgtttattttataagatctgtg |
498 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9176804 |
tttcctttgtttattttataagatctgtg |
9176776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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