View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_2 (Length: 698)
Name: NF9060_low_2
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 15 - 680
Target Start/End: Complemental strand, 55577475 - 55576806
Alignment:
| Q |
15 |
cagagacatcaagaaaacagaaacacagattaaactaccttttagtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttg |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55577475 |
cagaaacatcaagaaaacagaaacacagattaaactaccttttggtattcttgtccttgtccttcttcttcctcttcatcatcattattttcctcggttg |
55577376 |
T |
|
| Q |
115 |
cctccatatcctaggcagagagagaacaactaattaacataattgagagnnnnnnngaaacaactacgtaaataagagtataataatgtatgtatctatc |
214 |
Q |
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| T |
55577375 |
cctccatatcctaggcagagagagaacaactaattaacataattgagagaaaaaaagaaacaactacgtaaataagagtataataatgtatgtatctatc |
55577276 |
T |
|
| Q |
215 |
ttatgaaaatagttgtatccgcaaaacgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacataataagcaaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55577275 |
ttatgaaaatagttgtatccgcaaaacgcaatacagaatttcaggtttttcagtttgaagagaactgcaaaaaatgaatagagagacagaataagcaaga |
55577176 |
T |
|
| Q |
315 |
aagtaagagaggacttacagtggaatcttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggtccgtttggag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55577175 |
aagtaagagaggacttacagtggaatcttcttcttcttgctaaccgagaaagaacgaagacgagtgatcttcatgctaactgagattggtccgtttggag |
55577076 |
T |
|
| Q |
415 |
agagttgaat----ggatcggagagatggaggagaaattgaaggcgagggaaaaagaaaaggaatcgatgaagaaaaaccagggttagttgtttttagag |
510 |
Q |
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| T |
55577075 |
agagttgaatggatggatcggagagatggaggacaaattgaaggcgagggaaaaagaaaaggaatcgatgaagaaaaaccagggttagttgtttttaggg |
55576976 |
T |
|
| Q |
511 |
ttaaatatatgaccttggtcctttacaaataatgattaaaattgatttattcacttttagtccatatttgttgannnnnnnnnnnnnnnnnnnnataggg |
610 |
Q |
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|||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55576975 |
ttaa--atatgaccttagtcccttacaaataatgattaaaattgatttattcacttttagtccatatttgttgatttttagtccatttttttttataggg |
55576878 |
T |
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| Q |
611 |
atacaatgatgatgaaaacacataa--ttatagggattataaacatatttaatttgtttttatagtatggag |
680 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55576877 |
atacaatgatgatgaaaacacataattttatagggattataaacatatttaacttgtttttatagtatggag |
55576806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 10604013 - 10604055
Alignment:
| Q |
291 |
aatagagagacataataagcaagaaagtaagagaggacttaca |
333 |
Q |
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| T |
10604013 |
aatagagagacaaactaagcaagaaagtaagagaggacttaca |
10604055 |
T |
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