View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_22 (Length: 451)
Name: NF9060_low_22
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 2693278 - 2693713
Alignment:
| Q |
20 |
gcgagatcactgaacagaaacacaggaaaatatagaacaacaatgtacaagaagctacgcgtttgtatgttgagagcatcatcaacaaaaataatgttgc |
119 |
Q |
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| T |
2693278 |
gcgagatcactgaacagaaacacaggaaaatatagaacaacaatgtacaagaagctacgcgtttgtatgttgagagcatcatcaacaaaaataatgttgc |
2693377 |
T |
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| Q |
120 |
ctcactctttctaggtctaagttgtttcttctatgaataaggaaaatatagtgttattagttttcaccactgatcagttctttgaatttttggtgtgtga |
219 |
Q |
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| T |
2693378 |
ctcactctttctaggtctaagttgtttcttctatgaatagggaaaatatagtgttattagttttcaccactgatcagttctttgaatttttggtgtgtga |
2693477 |
T |
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| Q |
220 |
atagggataggttttgctaggtcaatagtaggataattgcttgcataaggtagagaagaaagaaaagcnnnnnnnntagaaatgtatagcagatgcatct |
319 |
Q |
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| T |
2693478 |
atagggataggttttgctaggtcaatagtaggataattgcttgcataaggtagagaagaaagaaaagcaaaaaaaatagaaatgtatatcagatgcatct |
2693577 |
T |
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| Q |
320 |
tgcatagattgtaattatttccta----ttttttccacagagagcatttgattgtcnnnnnnnacggtatttgattattattttacgaggtttacggtat |
415 |
Q |
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| T |
2693578 |
tgcatagattgtaattatttcctatattttttttccacagagagcatttgattgtctttttttacggtatttgattattattttgagaggtttacggtat |
2693677 |
T |
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| Q |
416 |
ttgattgtgttgtagtttaattaaccatataataac |
451 |
Q |
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| T |
2693678 |
ttgattgtgttgtagtttaattaaccatataataac |
2693713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 2686858 - 2686910
Alignment:
| Q |
233 |
ttgctaggtcaatagtaggataattgc-ttgcataaggtagagaagaaagaaa |
284 |
Q |
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| T |
2686858 |
ttgctaggtcaatggtagaataattgctttgcataagctagagaggaaagaaa |
2686910 |
T |
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