View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9060_low_27 (Length: 407)

Name: NF9060_low_27
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9060_low_27
NF9060_low_27
[»] chr7 (8 HSPs)
chr7 (139-296)||(7142483-7142642)
chr7 (1-140)||(7141350-7141489)
chr7 (295-385)||(7143728-7143818)
chr7 (207-296)||(9405377-9405466)
chr7 (152-295)||(10670060-10670205)
chr7 (177-304)||(9070895-9071025)
chr7 (229-291)||(26839717-26839779)
chr7 (179-257)||(3400295-3400375)
[»] chr4 (6 HSPs)
chr4 (144-296)||(47024273-47024427)
chr4 (170-296)||(17024449-17024577)
chr4 (157-296)||(10451002-10451145)
chr4 (236-296)||(12806479-12806539)
chr4 (157-251)||(10319794-10319890)
chr4 (177-296)||(15192700-15192820)
[»] chr5 (5 HSPs)
chr5 (152-288)||(26329585-26329723)
chr5 (205-296)||(12265126-12265217)
chr5 (205-295)||(20715083-20715172)
chr5 (215-295)||(17028776-17028857)
chr5 (177-270)||(25681066-25681161)
[»] scaffold0650 (1 HSPs)
scaffold0650 (157-296)||(5257-5398)
[»] chr3 (4 HSPs)
chr3 (158-295)||(13911745-13911884)
chr3 (186-270)||(33578234-33578320)
chr3 (233-293)||(33914126-33914186)
chr3 (177-270)||(19218745-19218839)
[»] chr1 (4 HSPs)
chr1 (152-296)||(26657936-26658082)
chr1 (184-295)||(23519259-23519370)
chr1 (181-295)||(12810635-12810751)
chr1 (177-239)||(34533099-34533163)
[»] chr8 (4 HSPs)
chr8 (207-296)||(22892762-22892851)
chr8 (207-296)||(11309814-11309903)
chr8 (205-293)||(32239765-32239853)
chr8 (181-296)||(28900845-28900962)
[»] chr6 (2 HSPs)
chr6 (205-295)||(17860003-17860094)
chr6 (205-296)||(30235890-30235981)
[»] scaffold0282 (1 HSPs)
scaffold0282 (157-296)||(22140-22281)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 7142483 - 7142642
Alignment:
Q  139 agtgcaaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggtt 236  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||    
T  7142483 agtgcaaaagactagttctcttctcctacatcctacctaatcatttgctataaatagagactcttgcactcattattattcatttagaacactgacggtt 7142582  T
Q  237 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7142583 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 7142642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 7141350 - 7141489
Alignment:
Q  1 tatgacatctaggcgtggtagatagtgaggagacattgctctcatttcaagtctcctcaaggttgtgaaggttttgttgcttctctgatcacttcctatt 100  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7141350 tatgacatctaggcgtggtaggtaatggggagacattgctctcatttcacgtctcctcaaggttgtgaaggttttgttgctactctgatcacttcctatt 7141449  T
Q  101 tcacaaacattttagaaaatctgcaatattctgatttaag 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7141450 tcacaaacattttagaaaatctgcaatattctgatttaag 7141489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 7143728 - 7143818
Alignment:
Q  295 tcaaggtatgaacgaatcttggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctg 385  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143728 tcaaggtatgaaggaatctaggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctg 7143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 9405466 - 9405377
Alignment:
Q  207 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    ||||||| |||||| |||||| |||||||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||    
T  9405466 cattatttttcattcagaacaataacggttcaagacaagggtcaaacgtcagagcttcaaggcaggatttattccttctcttgttctctc 9405377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 10670205 - 10670060
Alignment:
Q  152 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 249  Q
    |||| |||||||||| | ||||||||||||||| |||||||||||||| | |||||  |||||| |||||| | |||| | | |||||||  ||| ||||    
T  10670205 agttatcttctcctaaaccctacccaatcattttctataaatagagacccttgcactcattatttttcattcaaaacattgatggttcaaagcaagggtc 10670106  T
Q  250 aaacattagagcttcaaggcaagatttcttccttctcttgttctct 295  Q
    |||||| || ||||||||||| ||||| ||| ||||||||||||||    
T  10670105 aaacatcagggcttcaaggcaggatttattcgttctcttgttctct 10670060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 9070895 - 9071025
Alignment:
Q  177 aatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagat 274  Q
    |||| ||| |||||||||||||| | |||||  ||||||||||||| | |||||  ||||||||||  ||| ||||| ||| |||||||||||||| |||    
T  9070895 aatccttttctataaatagagacccttgcacttattattattcattcaaaacaccgacggttcaaggaaaatgtcaagcatcagagcttcaaggcatgat 9070994  T
Q  275 ttcttccttctcttgttctctc-aaggtatg 304  Q
    |||||||||||||| ||||||| ||||||||    
T  9070995 ttcttccttctcttcttctctctaaggtatg 9071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 26839779 - 26839717
Alignment:
Q  229 taacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgtt 291  Q
    |||||||||||| ||| |||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  26839779 taacggttcaaggcaagggtcaagcatcagagcttcaaggcaggatttcttcattctcttgtt 26839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 3400295 - 3400375
Alignment:
Q  179 tcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacatta 257  Q
    |||| |||||||||||||||||| |||||  ||| ||||||||||||||  ||||||||||||| | | |||||| |||||    
T  3400295 tcatatgctataaatagagactcttgcacgcattcttattcatttagaaatctaacggttcaaggcgagggtcaagcatta 3400375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 296
Target Start/End: Complemental strand, 47024427 - 47024273
Alignment:
Q  144 aaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaaga 241  Q
    ||||| |||| | |||||||||||| ||||   ||| |||| |||||||||||||| | |||||  |||||||||||||||||||| | |||||||||||    
T  47024427 aaaagtctagatttcttctcctacaccctaattaattattttctataaatagagacccttgcactaattattattcatttagaacattgacggttcaaga 47024328  T
Q  242 caaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    ||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  47024327 caagggtcaagcatcaaagcctcaaggcaagatttcttccttctcttgttctctc 47024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 17024577 - 17024449
Alignment:
Q  170 cctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaag 267  Q
    |||||| |||||||  |||||||||||||| | | |||  ||||||||||||| |||||| | |||||||||| ||| |||||| |||  ||||| ||||    
T  17024577 cctacctaatcattcactataaatagagacccttacactcattattattcattcagaacattgacggttcaaggcaagggtcaagcatcggagctccaag 17024478  T
Q  268 gcaagatttcttccttctcttgttctctc 296  Q
    ||||||||||||| |||||||||||||||    
T  17024477 gcaagatttcttctttctcttgttctctc 17024449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 10451145 - 10451002
Alignment:
Q  157 tcttctcctacatcctacccaatcatttgctataaatagagactcgtg--cacattattattcatttag-aacac-taacggttcaagacaaa-ggtcaa 251  Q
    |||||||||| | ||||||||||||||| |||||||| ||||||| ||  | |||||||||||||| || ||||| | ||||||  || |||| ||||||    
T  10451145 tcttctcctaaaccctacccaatcattttctataaattgagactcttgctctcattattattcattcagaaacacttgacggttggaggcaaagggtcaa 10451046  T
Q  252 acattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||    
T  10451045 acatcagagcttcaaggcagga-ttcttccttcttttgttctctc 10451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 12806539 - 12806479
Alignment:
Q  236 tcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    |||||| ||||||||||||| ||||||||||| ||| ||||||||||| | ||||||||||    
T  12806539 tcaagaaaaaggtcaaacatcagagcttcaagacaatatttcttccttttgttgttctctc 12806479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 10319890 - 10319794
Alignment:
Q  157 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgca--cattattattcatttagaacactaacggttcaagacaaaggtcaa 251  Q
    |||||||||| | |||||| |||||||||||||||||||||||   || |  ||||||| |||||  ||||||||||||||| ||| ||| ||||||    
T  10319890 tcttctcctaaaccctacctaatcatttgctataaatagagacatttgaattcattatttttcatccagaacactaacggttgaaggcaagggtcaa 10319794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 15192700 - 15192820
Alignment:
Q  177 aatcatttgctataaatagagactcgtgcac--attattattcatttagaa-cactaacggttcaagacaaaggtcaaacattagagcttcaaggcaaga 273  Q
    |||||||| ||||||||||||| || || ||  ||||||||||||| |||| || | ||| | |||| ||| |||||| |||||||||||||||| |||     
T  15192700 aatcattttctataaatagagattcttgtacccattattattcattcagaaacattgacgat-caaggcaagggtcaagcattagagcttcaagg-aagg 15192797  T
Q  274 tttcttccttctcttgttctctc 296  Q
     |||||| |||||||||||||||    
T  15192798 attcttcgttctcttgttctctc 15192820  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 26329723 - 26329585
Alignment:
Q  152 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 249  Q
    |||| |||||||||| | ||||||||||| |||||||||||||||  | | |||||  |||||| | ||| ||||||||||| |||||||| ||| ||||    
T  26329723 agttttcttctcctaaaccctacccaatcgtttgctataaatagatgcccttgcactcattattttccatatagaacactaatggttcaaggcaagggtc 26329624  T
Q  250 aaacattagagcttcaaggcaagatttcttccttctctt 288  Q
    || |||||||||||||||||| |||||||||||||||||    
T  26329623 aagcattagagcttcaaggcaggatttcttccttctctt 26329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 12265217 - 12265126
Alignment:
Q  205 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    |||| ||||||||||||||||  | | |||||||||  || |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  12265217 cacaatattattcatttagaaagccagcggttcaaggtaatggtcaagcatcagagtttcaaggtaggatttcttccttctcttgttctctc 12265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 20715083 - 20715172
Alignment:
Q  205 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 295  Q
    ||||| || |||||||||||||| | | |||| ||||||| |||||| ||| |||||||||  |||||| |||||||||||||||||||||    
T  20715083 cacataataattcatttagaacattgatggttaaagacaagggtcaagcatcagagcttcagagcaaga-ttcttccttctcttgttctct 20715172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 17028776 - 17028857
Alignment:
Q  215 ttcatttag-aacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 295  Q
    ||||||||| |||| |||| ||||||| ||| |||||||||| |||||||||| |||  |||||||||||  ||||||||||    
T  17028776 ttcatttagtaacattaacagttcaaggcaagggtcaaacatcagagcttcaatgcagtatttcttccttaccttgttctct 17028857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 25681066 - 25681161
Alignment:
Q  177 aatcatttgctataaatagagactcgtg--cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 270  Q
    ||||||||||||||||||||||| | ||  |||||||||| | ||| ||||  |||  |||||||| ||| |||||| |||||| | |||||||||    
T  25681066 aatcatttgctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcattagggtttcaaggca 25681161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 5398 - 5257
Alignment:
Q  157 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaaca 254  Q
    |||||||||| | |||||| | | |||  |||||||||||||| | |||||  ||||||||||||| |||||||| |||||||||| ||| |||||| ||    
T  5398 tcttctcctaaaacctacctagttattatctataaatagagacccttgcactcattattattcattaagaacactgacggttcaaggcaagggtcaagca 5299  T
Q  255 ttagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    | |||||||||||||| ||||||||| |||||||||||||||    
T  5298 tcagagcttcaaggcaggatttcttcattctcttgttctctc 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 13911745 - 13911884
Alignment:
Q  158 cttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacat 255  Q
    ||||||| | ||||||||||||||||| |||||||||||||| | |||||  ||||||||| ||| || ||||| || ||||||| ||| ||||||  ||    
T  13911745 cttctccaaaatcctacccaatcattttctataaatagagacccttgcactcattattattgattgaggacactgacagttcaaggcaagggtcaagtat 13911844  T
Q  256 tagagcttcaaggcaagatttcttccttctcttgttctct 295  Q
     | |||||||||||| ||||| ||||||||||||||||||    
T  13911845 catagcttcaaggcatgattttttccttctcttgttctct 13911884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 33578234 - 33578320
Alignment:
Q  186 ctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 270  Q
    |||||||||||||| | ||||||   | ||||||||||||||  ||| ||||||||| ||| |||||||||||||||||||||||||    
T  33578234 ctataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggtcaaacattagagcttcaaggca 33578320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 33914186 - 33914126
Alignment:
Q  233 ggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 293  Q
    |||||||| |||||||||||||| |||| |||| | ||| |||||||||| ||||||||||    
T  33914186 ggttcaaggcaaaggtcaaacatcagagtttcatgacaaaatttcttcctcctcttgttct 33914126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 19218839 - 19218745
Alignment:
Q  177 aatcatttgctataaatagagactcgtg--cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 270  Q
    |||||| | |||||||||||||| | ||  |||||| ||||||||| | ||  ||||||||||||||||| |||||| ||| |||| |||||||||    
T  19218839 aatcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaagggtcaagcatcagag-ttcaaggca 19218745  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 296
Target Start/End: Original strand, 26657936 - 26658082
Alignment:
Q  152 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 249  Q
    |||| |||||||||| | |||||||||||||||| |||||||||| || |  ||||  |||||| || ||| ||||||||  | ||||||| ||| ||||    
T  26657936 agttttcttctcctaaaccctacccaatcatttgttataaatagataccctagcactcattattttttattcagaacactggcagttcaaggcaagggtc 26658035  T
Q  250 aaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    || ||| |||||||||||| | ||||||||| |||||||||||||||    
T  26658036 aagcatcagagcttcaaggaatgatttcttcattctcttgttctctc 26658082  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 23519370 - 23519259
Alignment:
Q  184 tgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttcc 281  Q
    |||||||||||||||| | ||||||  ||||  ||||||||||||| | ||||| | || ||| ||||||||||||||||||||| | | |||| |||||    
T  23519370 tgctataaatagagacccttgcacacattatagttcatttagaacattgacggt-ctaggcaagggtcaaacattagagcttcaacgtaggatt-cttcc 23519273  T
Q  282 ttctcttgttctct 295  Q
    ||||||||||||||    
T  23519272 ttctcttgttctct 23519259  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 12810635 - 12810751
Alignment:
Q  181 atttgctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 278  Q
    |||| ||||||||||| |||| |||||||  ||||||||||| |||||||| ||  ||||||  || |||||||  | | |||||||||||| |||||      
T  12810635 attttctataaatagaaactcttgcacatattattattcattcagaacactgacaattcaaggaaagggtcaaaactcaaagcttcaaggcaggattttg 12810734  T
Q  279 tccttctcttgttctct 295  Q
    || ||||||||||||||    
T  12810735 tcattctcttgttctct 12810751  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 34533099 - 34533163
Alignment:
Q  177 aatcatttgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaa 239  Q
    |||||| || ||||||||||||||| ||||||  || |||||||||||||| |||||| ||||||    
T  34533099 aatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaa 34533163  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 22892851 - 22892762
Alignment:
Q  207 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    ||||||| |||||| |||||||  |||||||||| ||| |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  22892851 cattatttttcattcagaacacggacggttcaaggcaagggtcaagcatcagagtttcaaggaaggatttcttccttctcttgttctctc 22892762  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 11309903 - 11309814
Alignment:
Q  207 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    |||||||||||||| ||||||||    | ||||||||| |||||||||| ||||||||||| |||| | ||||||| |||||||||||||    
T  11309903 cattattattcattcagaacactggaagatcaagacaatggtcaaacatcagagcttcaagacaagttatcttcctcctcttgttctctc 11309814  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 32239765 - 32239853
Alignment:
Q  205 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 293  Q
    |||||||||||| ||| ||||  ||| ||||||||  ||||||||||||||||||| |  ||||||||||||| |||| ||||||||||    
T  32239765 cacattattatttattcagaaagctagcggttcaatgcaaaggtcaaacattagagttcaaaggcaagatttcatcctcctcttgttct 32239853  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 28900962 - 28900845
Alignment:
Q  181 atttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 278  Q
    |||| ||||||||||||||   |||||  ||||||||   ||||||||||| ||| |||||  |||| || | |||| |||||||||||| | |||||||    
T  28900962 attttctataaatagagaccattgcactcattattatggctttagaacactgacgcttcaaagcaaaagttagacatcagagcttcaaggtaggatttct 28900863  T
Q  279 tccttctcttgttctctc 296  Q
    |||||||  |||||||||    
T  28900862 tccttcttgtgttctctc 28900845  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 17860094 - 17860003
Alignment:
Q  205 cacattattattcatt-tagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 295  Q
    |||||||||||||||| |  |||| | |||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  17860094 cacattattattcattcttaaacattgacggttcaatgcaagggtcaaacatcagagcttcaaggcatgatttcttccttctctggttctct 17860003  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 30235981 - 30235890
Alignment:
Q  205 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    ||||||||| || ||| |||| |||| |||||||||| || |||||||||| |||| || |||| | ||||||||||| |||||||||||||    
T  30235981 cacattattttttattcagaaaactagcggttcaagaaaagggtcaaacatcagagttttaaggtaggatttcttcctcctcttgttctctc 30235890  T

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Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 22281 - 22140
Alignment:
Q  157 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaa-cactaacggttcaagacaaaggtcaaac 253  Q
    |||||||||| |||||||||||||||||| | ||| ||||||| | ||| |  |||||| |||||| |||| |||||  | ||||||  | ||||||| |    
T  22281 tcttctcctaaatcctacccaatcatttgatttaactagagacccttgctctcattatttttcattcagaaacactatag-ttcaaggaataggtcaagc 22183  T
Q  254 attagagcttcaaggcaagatttcttccttctcttgttctctc 296  Q
    || |  ||||||||||| ||||||||||||||||| |||||||    
T  22182 atcatcgcttcaaggcaggatttcttccttctcttattctctc 22140  T

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