View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_30 (Length: 364)
Name: NF9060_low_30
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 27124897 - 27125141
Alignment:
| Q |
19 |
cttatggcggcaaatttttatccaccatgtcctcaacctgacctaaccctaggcatgccccctcattctgactatggattcctcacactccttcttcaag |
118 |
Q |
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| T |
27124897 |
cttatggcggcaaatttttatccaccatgtcctcaacctgacctaaccctaggcatgccccctcattctgactatggattcctcacactccttcttcaag |
27124996 |
T |
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| Q |
119 |
atgaagtagagggtttgcaagtccaattccaagaacaatggttcacggttcaacctattaataatacattcgttgttaatgttggtgatcaccttgaggt |
218 |
Q |
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| T |
27124997 |
atgaggtagagggtttgcaagtccaattccaagaacaatggttcacggttcaacctattaataatacattcgttgttaatgttggtgatcaccttgaggt |
27125096 |
T |
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| Q |
219 |
atggatattccatttagttgcaagtttaatggaacaatttaaata |
263 |
Q |
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| T |
27125097 |
atggatattccatttagttgcaagtttaatggaacaatttaaata |
27125141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 27125588 - 27125626
Alignment:
| Q |
311 |
ttgatgtatcctatttacgttgctaattttttgttgtat |
349 |
Q |
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| T |
27125588 |
ttgatgtatcctatttacgttgctaattttttgttgtat |
27125626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 41604394 - 41604216
Alignment:
| Q |
31 |
aatttttatccaccatgtcctcaacctgacctaaccctaggcatgccccctcattctgactatggattcctcacactccttcttcaagatgaagtagagg |
130 |
Q |
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| T |
41604394 |
aatttttacccaccatgccctgaaccagacctaacacttggaatgcaccctcactctgattatggcttcctcacacttctcctccaagatgaagtggagg |
41604295 |
T |
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| Q |
131 |
gtttgcaagtccaattccaagaacaatggttcacggttcaacctattaataatacattcgttgttaatgttggtgatca |
209 |
Q |
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| T |
41604294 |
gtttgcaaatccaatatcaagacaaatggctcactgttcaacctattcccaatgctttcgttgtcaatattggtgatca |
41604216 |
T |
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