View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9060_low_32 (Length: 341)

Name: NF9060_low_32
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9060_low_32
NF9060_low_32
[»] chr1 (3 HSPs)
chr1 (86-325)||(1718061-1718300)
chr1 (19-88)||(1718331-1718400)
chr1 (222-268)||(38483819-38483865)
[»] chr3 (13 HSPs)
chr3 (215-319)||(26647851-26647955)
chr3 (218-313)||(26654001-26654096)
chr3 (215-289)||(20033501-20033575)
chr3 (216-292)||(19951998-19952074)
chr3 (222-313)||(20015375-20015466)
chr3 (223-325)||(20007447-20007549)
chr3 (237-291)||(19849871-19849925)
chr3 (215-273)||(20006421-20006479)
chr3 (215-292)||(20035770-20035847)
chr3 (86-213)||(26648113-26648243)
chr3 (223-292)||(19813157-19813226)
chr3 (215-279)||(19956971-19957035)
chr3 (88-144)||(19952284-19952340)
[»] chr5 (3 HSPs)
chr5 (215-299)||(26354094-26354178)
chr5 (222-292)||(9815908-9815978)
chr5 (223-273)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (215-289)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (227-291)||(12582137-12582201)
chr7 (227-291)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (224-263)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (224-263)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 1718300 - 1718061
Alignment:
Q  86 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  186 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 285  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  286 cctacatcagctctaggtttcgttgaacatgcacgtctct 325  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1718100 cctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1718400 - 1718331
Alignment:
Q  19 acattgttgttcggagcaacnnnnnnnctgatagaaaagtttttgcatcttgcttcttctctcccatttg 88  Q
    |||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||    
T  1718400 acattgttgttcggagtaactttttttctgatagaaaagtttttgcatcttgcttcttctctcccatttg 1718331  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  222 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 268  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 314  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  315 tgcac 319  Q
    |||||    
T  26647855 tgcac 26647851  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  218 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 313  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  216 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 292  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  222 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 313  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  223 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 322  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  323 tct 325  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  237 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 291  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 273  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 292  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  86 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 182  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  183 agattcatggattatgccaccacatttgtac 213  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  223 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 292  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 279  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 19952340 - 19952284
Alignment:
Q  88 gaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataa 144  Q
    |||||||| ||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataa 19952284  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  222 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 292  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  223 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 273  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  215 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 289  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  227 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 291  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  227 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 291  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  224 caacaagattgggaggaaatccaggtggaacaccaacatc 263  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  224 caacaagattgggaggaaatccaggtggaacaccaacatc 263  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

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