View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_33 (Length: 331)
Name: NF9060_low_33
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11646849 - 11646601
Alignment:
| Q |
1 |
aactaacacatacccaccacatatcatgtctttgttgattaattttcttattataggcaaatattaatatattagttgttatattaatatttttctagag |
100 |
Q |
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| T |
11646849 |
aactaacacatacccaccacatattatgtctttgttgattaattttcttattataggcaaatattaatatattagttgttatattaatatttttctagag |
11646750 |
T |
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| Q |
101 |
taaagttggaccataattcatctattataggttggcgatgctataggtaccatatatagatatatatttggtttttctcttgtttagtctacgttatggt |
200 |
Q |
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| T |
11646749 |
taaagttggaccataatttatctattataggttggcgatgctataggtaccatatatagatatatatttggtttttctcttgtt-----tacgttatggt |
11646655 |
T |
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| Q |
201 |
gtttttagcataatatttacgggttagcaatcattttgatttttaacatgtgagata |
257 |
Q |
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| T |
11646654 |
gtttttagcataatatttacgagttagcaatcattttga---ttaacatgtgagata |
11646601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 11646326 - 11646268
Alignment:
| Q |
256 |
tattgtttatagtttttaaagcgtatagaaattgcaaacacgtcatcaaacatctgcaca |
315 |
Q |
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| T |
11646326 |
tattgtttatagtttttaaa-cgtattgaaattgcaaacacgtcatcaaacatctgcaca |
11646268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 2057071 - 2057035
Alignment:
| Q |
58 |
caaatattaatatattagttgttatattaatattttt |
94 |
Q |
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| T |
2057071 |
caaatgttaatatattagttgttatattagtattttt |
2057035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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