View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_36 (Length: 328)
Name: NF9060_low_36
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 2059215 - 2059518
Alignment:
| Q |
20 |
attactagatcatataaataagtaaaaatatcagttcatataaatagttgaatgaacttggtgagttcatggtggagtagctattattcatcaattccac |
119 |
Q |
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| T |
2059215 |
attactagctcatattaataagtaaaaatatcagttcatataaatagttgaatgaacttggtgagttcatggtggagtagctattattcatcaattccac |
2059314 |
T |
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| Q |
120 |
aagattatgatgtgaactagaactttgatgtggtttcttccatttcatgctatggatgaaattacaaagtataaacattcacttatcgtaaacaatggtc |
219 |
Q |
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| T |
2059315 |
aagattatgatgtgaactagaactttgatgtggtttcttctatttcatgctatggatg-aattacaaagtataaacattcacttatcgtaaacaatggtc |
2059413 |
T |
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| Q |
220 |
atttgattatgttaaa--tcgatgttttcctagtaaacttgctataactcgaatgctcttgggaataatcgttggtccgtattctacaatctttcgaaca |
317 |
Q |
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| T |
2059414 |
atttgatt-tacaaaacttcgatgttttcctagtaaacttgctataactcgaatgctcttgggaataatcgttggtccgtattctacaatctttcgaaca |
2059512 |
T |
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| Q |
318 |
ccaaac |
323 |
Q |
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|||||| |
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| T |
2059513 |
ccaaac |
2059518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 2048300 - 2048396
Alignment:
| Q |
103 |
ttattcatcaattccacaagattatgatgtgaactagaactttgatgtggtttcttccatttcatgctatggatgaaattacaaagtataaacattcac |
201 |
Q |
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| T |
2048300 |
ttattcatcaattccacaagat-atgacatgaactagaaatatgatgtcgtttcttctatttcatgctatggatg-aattacaaagtataaacattcac |
2048396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 2035029 - 2035116
Alignment:
| Q |
132 |
tgaactagaactttgatgtggtttcttccatttcatgctatggatgaaattacaaagtataaacattcacttatcgtaaacaatggtcattt |
223 |
Q |
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| T |
2035029 |
tgaactagaaatatggtgtggtttct---atttcatgctatggatgaa-ttaaaaagtataaacattcacttattgaaaacaaatgtcattt |
2035116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 2039153 - 2039194
Alignment:
| Q |
161 |
atttcatgctatggatgaaattacaaagtataaacattcactt |
203 |
Q |
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| T |
2039153 |
atttcatgctatggatgaa-ttacaaagcataaacattcactt |
2039194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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