View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_37 (Length: 326)
Name: NF9060_low_37
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 13301516 - 13301200
Alignment:
| Q |
1 |
ttcgggatcagcacaagtgggtttgccattgacttgattgtaggaacacattacactcgccaccttcccatccctaacgcatgctttgaacggaacatca |
100 |
Q |
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| T |
13301516 |
ttcgggatcagcacaagtaggcttgccattgacttgattgtaggaacacattacactcgccaccttcccatccctaacgcatgctttgaacggaacatca |
13301417 |
T |
|
| Q |
101 |
tatgtgtctgccaaatcttgtttactcacctgcataaagatccacatattaacaattcaaatctttgtataattttttgacattggttaatgaatattt- |
199 |
Q |
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| T |
13301416 |
tatgtgtctgccaaatcttgtttactcacctgcataaagatccacatattaacaatccaaatctttgtataattttttgacattggttaatgaatattta |
13301317 |
T |
|
| Q |
200 |
-tctatcaacaatactatcggcgcaagtgattgatgcataatgcgagtgttgtaaatttaggatatcaaattcgatttacactaatagataattatgggt |
298 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13301316 |
ctctatcaacaatactatcagcgcaagtgattgatgcataatgcgagtgttgtaaatttgggatatcaaattcgatttacactaatagataattatgggt |
13301217 |
T |
|
| Q |
299 |
aaattcttctgcaatta |
315 |
Q |
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||||||||||||||||| |
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| T |
13301216 |
aaattcttctgcaatta |
13301200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 37610676 - 37610627
Alignment:
| Q |
8 |
tcagcacaagtgggtttgccattgacttgattgtaggaacacattacact |
57 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
37610676 |
tcagcacaagtcggttttccatttacttgattgtaggaacacataacact |
37610627 |
T |
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