View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_38 (Length: 314)
Name: NF9060_low_38
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 25086556 - 25086445
Alignment:
| Q |
185 |
cctttcttccaaatagcacaacaatcatggaattagaagtaatggttttcctctccggcatccagtcatacacacattcttcctcctcaacatatcccaa |
284 |
Q |
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| T |
25086556 |
cctttcttccaaatagcacaacaatcatggaattagaagtaatggttttcctctccggcatccagtcatacacacattcttcctcctcaacatatcccaa |
25086457 |
T |
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| Q |
285 |
acacctcacttg |
296 |
Q |
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| T |
25086456 |
acacctcacttg |
25086445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 25086748 - 25086575
Alignment:
| Q |
12 |
aagcagagataacactaaccaccacaaccatttcatccaccataatcccattagcattcatatttgcnnnnnnnnnnnnnnnnnnntgcctcctcacaca |
111 |
Q |
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| T |
25086748 |
aagcagagataacactaaccac---aaccatttcatccaccataatcccattagcattcatatttgcaaaaaaataataaaaaaa-tgcctcctcacaca |
25086653 |
T |
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| Q |
112 |
tcccattctgtttagaacaagaaatcattgcactccaagaaaccatatagtttccttcaatccgatcaaaaagccttt |
189 |
Q |
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| T |
25086652 |
tcccattctgtttataacaagaaatcattgcactccaagaaaccatatagtttccttcaatccgatcaaaaagccttt |
25086575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 20867273 - 20867359
Alignment:
| Q |
98 |
tgcctcctcacacatcccattctgtttagaacaagaaatcattgcactccaagaaaccatatagtttccttcaatccgatcaaaaag |
184 |
Q |
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| T |
20867273 |
tgcctcctcacacatcccattctgttcataacaagaaatcattgcactccatgacaccatatccttcccttcaatccgatcaaaaag |
20867359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 20867400 - 20867480
Alignment:
| Q |
205 |
acaatcatggaattagaagtaatggttttcctctccggcatccagtcatacacacattcttcctcctcaacatatcccaaa |
285 |
Q |
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||||||||||| || |||| |||||| |||||| |||||||| ||||||||||||||| ||||| |||||| ||||||| |
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| T |
20867400 |
acaatcatggagttcgaagcaatggtgttcctcaccggcatcttgtcatacacacattccgcctccacaacatctcccaaa |
20867480 |
T |
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