View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_40 (Length: 308)
Name: NF9060_low_40
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 20608459 - 20608738
Alignment:
| Q |
10 |
agaacctgtgattgagtgaaggaagatcatccttgttagacagggcttgagcagactattgcataatgagaatgaagaactcaacaagctatttgactta |
109 |
Q |
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| T |
20608459 |
agaacctgtaattgagtgaaggaagatcatccttgttagacagggcttgagcagactattgcataatgagaatgaagaactcaacaagctatttgactta |
20608558 |
T |
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| Q |
110 |
gtttacttgctcctcaagtaactagctaatagtatagattaacatagtaattagattgatcagctataggtaagctcgtagcagtaaatacatactgtaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20608559 |
gtttacttgctcctcaagtaactagctaatagtatagattagcatagtaattagattgatcagctataggtaagctcgtagcagtaaatacatactgtaa |
20608658 |
T |
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| Q |
210 |
acactgattcagtaaattcaataacacaattcattcacttcataatacaaacgtcttgcattgaggggaagacttagacg |
289 |
Q |
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| T |
20608659 |
acactgattcagtgaattcaataacgcaattcattcacttcataatacaaacgtcttgcattgaggggaagactcagacg |
20608738 |
T |
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