View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_42 (Length: 263)
Name: NF9060_low_42
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 6251235 - 6251367
Alignment:
| Q |
115 |
cttattttttggtacta--atttgatctttaccgaccgatataatttacatagaaaattctagtttattttcttcttttcatggaaaaaataggatctag |
212 |
Q |
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| T |
6251235 |
cttattttttggtactataatttgatctttaccgaccgatataatttacatagaaaaatttagtttattttcttcttttcatggaaaaaataggatctag |
6251334 |
T |
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| Q |
213 |
ttgaaaatttgtacacgattaattggttttcat |
245 |
Q |
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| T |
6251335 |
ttgaaaatttgtacacgattaattggttttcat |
6251367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 6183721 - 6183841
Alignment:
| Q |
120 |
tttttggtactaatttgatctttaccgaccgatataatttacatagaaaattctagtttattttcttcttttcatgg-aaaaaataggatctagttgaaa |
218 |
Q |
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|||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
6183721 |
tttttggtactaatttgatcttcactgatcgatataatttacaaagaaatatctagtttatt---ttcttttcatggaaaaaaatagaatctagttgaaa |
6183817 |
T |
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| Q |
219 |
atttgtacacgattaattggtttt |
242 |
Q |
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|||||| |||||||||| |||||| |
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| T |
6183818 |
atttgtgcacgattaatcggtttt |
6183841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 6251137 - 6251170
Alignment:
| Q |
17 |
agatccaaggttgaattcaaaaaacagaataagc |
50 |
Q |
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| T |
6251137 |
agatccaaggttgaattcaaaaaacagaataagc |
6251170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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