View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_52 (Length: 228)
Name: NF9060_low_52
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_52 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6959866 - 6960093
Alignment:
| Q |
1 |
caccctgaactcagacaaccgcaagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgt |
100 |
Q |
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| T |
6959866 |
caccctgaactcagacaaccgcaagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgt |
6959965 |
T |
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| Q |
101 |
tgactaatttggcgaaggttgtatcaattaaaaacataagctccataattcaggtttgttatcttcacatttgtttttcaaacttctagccatgaaaaat |
200 |
Q |
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| T |
6959966 |
tgactaatttggcgaaggttgtatcaattaaaaacataagctccataattcaggtttgttatcttcacatttgtttttcaaacttctagccatgaaaaat |
6960065 |
T |
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| Q |
201 |
gttagtaattaagatgattataacttgt |
228 |
Q |
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| T |
6960066 |
gttagtaattaagatgattataacttgt |
6960093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 6967284 - 6967460
Alignment:
| Q |
1 |
caccctgaactcagacaaccgcaagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgt |
100 |
Q |
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| T |
6967284 |
cacccggaactcaggcaaccacgagttatggaaatttgggagtctttattgcaaacactgaaaccagggtctaagattacagtattaaccaatggaccct |
6967383 |
T |
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| Q |
101 |
tgactaatttggcgaaggttgtatcaattaaaaacataagctccataattcaggtttgttatcttcacatttgtttt |
177 |
Q |
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| T |
6967384 |
tgactaatttggcaaaggttgtatcagttaaaaacataagctccagaattcaggtaagttatctttacatttgtttt |
6967460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 181406 - 181200
Alignment:
| Q |
22 |
caagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgttgactaatttggcgaaggttg |
121 |
Q |
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|||||||||||||||||||||| | |||||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
181406 |
caagctatggaaatttgggaatttttattgcaaacatcgaaaccagagtctaagattacagtattaaccaatggacccttgactaatttggcaaaggttg |
181307 |
T |
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| Q |
122 |
tatcaattaaaaacataagctccataattcaggtttgttatcttcacatttgtttttcaaacttctagccatgaaaaatgttagtaattaagatgattat |
221 |
Q |
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| T |
181306 |
tatcagttaaaaacataagctccataatttaggttagttatcgtcacacttgtttttcaaacttctatccatgaaaaatgttagtaattaagatggttat |
181207 |
T |
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| Q |
222 |
aacttgt |
228 |
Q |
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||||||| |
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| T |
181206 |
aacttgt |
181200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 49101282 - 49101145
Alignment:
| Q |
6 |
tgaactcagacaaccgcaagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgttgact |
105 |
Q |
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|||||| |||||||| | |||||||||| ||||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| || ||| |
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| T |
49101282 |
tgaacttagacaaccactagctatggaagtttgggagtctgtattgcaaacaatgaaaccagggtccaatattacagtattaaccaatggacccttaact |
49101183 |
T |
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| Q |
106 |
aatttggcgaaggttgtatcaattaaaaacataagctc |
143 |
Q |
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| T |
49101182 |
aatttggcaaaggttgtttcaatgactaacataagctc |
49101145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 49113242 - 49113088
Alignment:
| Q |
1 |
caccctgaactcagacaaccgcaagctatggaaatttgggaatctatattgcaaacattgaaaccagggtctaaggttacagtattaaccaatggaccgt |
100 |
Q |
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| T |
49113242 |
cacccagaacttagacaaccactagctatggaagtttgggagtctgtattgcaaacaatgaaaccagggtccaatattactgtactaaccaacggaccct |
49113143 |
T |
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| Q |
101 |
tgactaatttggcgaaggttgtatcaattaaaaacataagctccataattcaggt |
155 |
Q |
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||||||||||||| || ||||| ||| | ||||| |||||||| | ||||||||| |
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| T |
49113142 |
tgactaatttggcaaacgttgtttcagtgaaaaatataagctctagaattcaggt |
49113088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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