View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_low_8 (Length: 593)
Name: NF9060_low_8
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 175 - 574
Target Start/End: Complemental strand, 38092604 - 38092203
Alignment:
| Q |
175 |
gcctaacaaacagtaggaaagtgtttgatgagttacatgataagaggaatgaggtatttataaaggaatgaggaccatttatgtgacnnnnnnnnnnnnn |
274 |
Q |
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| T |
38092604 |
gcctaaaaaacagtaggaaagtgtttgatgagttagctgataagagaaatgaggtatttataatggaatgagaaccatttatgtgacttttttgtttttt |
38092505 |
T |
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| Q |
275 |
gatataattttatgtgactttttgaatcaatggctcaataatgctggttttcttagtgtttggactttggtgggttccaacannnnnnn--aggtaaatc |
372 |
Q |
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| T |
38092504 |
gatataattttatgtgactttttgaatcaatggctcaataatgctggttttcttagtgtttggactttggtgggttccaacatttttttttaggtaaatc |
38092405 |
T |
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| Q |
373 |
tataagcatatcagttatttaactatattactaagatctacttagnnnnnnnnnctattaccaaagattcactatatcgacttaaaatgttttaaaaatg |
472 |
Q |
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| T |
38092404 |
tataagcatatcagttatttaactatattactaagatctacttagaaaaaaaaattattatcaaagattcactatatcgacttaaaatgttttaaaaatg |
38092305 |
T |
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| Q |
473 |
aaaggaagggttgatggaaacaggtggagggcatttcctaatagatcattttcatttgatgactcattcaattgtaatccaacaactcattcatgttctg |
572 |
Q |
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| T |
38092304 |
aaaggaagggttgatggaaacaggtggagggcatttcctaatagatcattttcatttgatgactcattcaattgtaatccaacaactcattcatgttctg |
38092205 |
T |
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| Q |
573 |
ac |
574 |
Q |
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| T |
38092204 |
ac |
38092203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 38092773 - 38092649
Alignment:
| Q |
10 |
ggagcagagacgagtccggttttggtgaatagttgcaagagctgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttgctgcc |
109 |
Q |
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| T |
38092773 |
ggagaagagacgagttcggttttggtgaatagttcccagagctgatttgcagttatggattggttcagtgtggccttgtgccacagccatggttgctgcc |
38092674 |
T |
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| Q |
110 |
atccaaacacggttcaagtaactca |
134 |
Q |
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| T |
38092673 |
atccaaacacggttcatgtaactca |
38092649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 38089785 - 38089666
Alignment:
| Q |
15 |
agagacgagtccggttttggtgaatagttgcaagagctgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttgctgccatcca |
114 |
Q |
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| T |
38089785 |
agagacgagttcggttttggtgaatagttccaagagctgttttgcacttatagattggatcagtgtggccttgtgccaccgccactgttgctgccatcca |
38089686 |
T |
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| Q |
115 |
aacacggttcaagtaactca |
134 |
Q |
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| T |
38089685 |
aacacggttcaaataactca |
38089666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 38096053 - 38095929
Alignment:
| Q |
10 |
ggagcagagacgagtccggttttggtgaatagttgcaagagctgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttgctgcc |
109 |
Q |
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| T |
38096053 |
ggagaagagacgagttcggttctggtgaatagatccgacggctgttttgcacttgtggcctggatcggtgtggccttgcgccaccgctacggttgctgcc |
38095954 |
T |
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| Q |
110 |
atccaaacacggttcaagtaactca |
134 |
Q |
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| T |
38095953 |
atccaaacacggttcaagtaactca |
38095929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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