View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_high_12 (Length: 411)
Name: NF9061_high_12
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 9681121 - 9681502
Alignment:
| Q |
18 |
aatccctacatcaattgcagacctaacaaatcttcaatatgcagatttatcatataataaactctctggaacattacctaaaaacctcacaaatcttaca |
117 |
Q |
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| T |
9681121 |
aatccctacatcaattgcagacctaacaaatcttcaatatgcagatttatcatataataaactctctggaacattacctaaaaacctcacaaatcttaca |
9681220 |
T |
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| Q |
118 |
catcttttctcattcaatgtttcctataacaatcttaaaggtgaattaccaattgatggattcttcaacacaatcactccttcatttgttcatggaaatc |
217 |
Q |
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| T |
9681221 |
catcttttctcattcaatgtttcctataacaatcttaaaggtgaattaccaattggtggattcttcaacacaatcactccttcatttgttcatggaaatc |
9681320 |
T |
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| Q |
218 |
ctttattatgtggttctgttgttaatcactcgtgtgatcaatcttatcatccaaaacctattgttttaaaccctaattcaaattacaacaattcaagatc |
317 |
Q |
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| T |
9681321 |
ctttattatgtggttctcttgttaatcactcgtgcgatcaatcttatcatccaaaacctattgttttaaaccctaattcaaattacaacaattcaagatc |
9681420 |
T |
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| Q |
318 |
ttccttgaaaaaccatcatcataagataatgctaagtgtttcggtctttattgctatcggtgcagctatttctattgatgtc |
399 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9681421 |
ttccttaaaaaaccatcatcataagataatgctaagtgtttcggtctttattgctatcggtgcagctatttctattgttgtc |
9681502 |
T |
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