View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_high_18 (Length: 354)
Name: NF9061_high_18
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 45 - 339
Target Start/End: Original strand, 40114373 - 40114667
Alignment:
| Q |
45 |
ggtgggttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcggttgtattaaggatgggtagggaaaat |
144 |
Q |
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| T |
40114373 |
ggtggtttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcagttgtattaaggatgggtagggaaaat |
40114472 |
T |
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| Q |
145 |
ggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccgacaaagat |
244 |
Q |
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| T |
40114473 |
ggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccaacaaagat |
40114572 |
T |
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| Q |
245 |
acacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattat |
339 |
Q |
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| T |
40114573 |
acacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattat |
40114667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 328
Target Start/End: Complemental strand, 3018172 - 3017982
Alignment:
| Q |
138 |
ggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccga |
237 |
Q |
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| T |
3018172 |
ggaaaatggttgtcatggaatacaacatgacgtgaagtataaattttgttggttttgggatctagacaacgatatgcatattgtgagggtgagtaaccaa |
3018073 |
T |
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| Q |
238 |
caaagatacacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtg |
328 |
Q |
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| T |
3018072 |
tgaatatacatgatatagatttgggttggagtttatggtttgtgtaaggttttagccatgggaaacaaaggcatccaaaggagtgtaggtg |
3017982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 655584 - 655711
Alignment:
| Q |
115 |
tcggttgtattaaggatgggtagggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggc |
214 |
Q |
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| T |
655584 |
tcggttgtatcaaggatgtatatggaaagtggttatcatggaagacaacatggcgagatgtgtagattta-ttggttgtaggatctaagcaacgataagc |
655682 |
T |
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| Q |
215 |
atattgagatggtgagtaaccgacaaaga |
243 |
Q |
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| T |
655683 |
atattgagagggtgagtagcctacaaaga |
655711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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