View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_high_24 (Length: 250)
Name: NF9061_high_24
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48998903 - 48998672
Alignment:
| Q |
1 |
aaagtttatggaattgtgagactttttcgatctaaagaagatggnnnnnnnggttgtcctaaagtttgctnnnnnnntggttgtagaaataaaatttcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| || |
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| T |
48998903 |
aaagtttatggaattgtgagactttttcgatcaaaagaagatggaaaaaaaggttgtcctaaaagttgctaaaaaaatggttgtagaaataaaattttgc |
48998804 |
T |
|
| Q |
101 |
attcaataaataaactcattttgaaatgaaactccatttgcataatgtacttgaatcaaatgtcagctgcaaactttgagaatgaaattgaatcaaatgt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48998803 |
attcaataaataaactcattttcaaatgaaactccatttgcataatgtacttgaatcaaatgtcagctgcaaactttgagaatgaaattgaatcaaatgt |
48998704 |
T |
|
| Q |
201 |
ctgagcttgcaacttaaatctagacatagttttg |
234 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
48998703 |
ct--gcttgcaacttaaatctagacatagttttg |
48998672 |
T |
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