View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_high_5 (Length: 540)
Name: NF9061_high_5
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 44262532 - 44262020
Alignment:
| Q |
18 |
agtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttcaatcttcatgattgaaaattggcattaggaagtgattcagct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262532 |
agtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttcaatcttcatgattgaaaattggcattaggaagtgattcagct |
44262433 |
T |
|
| Q |
118 |
cattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctctgtggtacaatatccaatgatatag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
44262432 |
cattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctcagtggttcaatatccaatgatatag |
44262333 |
T |
|
| Q |
218 |
aaacactttaaagtctaacctctcttagcttatgttgcaacactttttcatcaccattgtcaaaatccatggaaaatctcaccacactgaacatttttta |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262332 |
aaacactttaaagtctaacctctcttagcttctgttgcaacactttttcatcaccattgtcaaaatccatggaaaatctcaccacactgaacatttttta |
44262233 |
T |
|
| Q |
318 |
gataagcaataatttcactattggaaggtcaaggatacttacaaccttaaatgcatccatcccgaggagcttggaagttccacttccttatagacgcctc |
417 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44262232 |
gataagcaataatttcactattggaaggtcagggatacttacaaccttaaatgcatccatcccaaggagcttggaagttccacttccttatagacgcctc |
44262133 |
T |
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| Q |
418 |
gactagatgttcttgagccatggaacatccaatttactctggagagattaaagaaactcttggcagccaaggaaatctcacaacattgatacttttcaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262132 |
gactagatgttcttgagccatggaacatccaatttactctggagagattaaagaaactcttggcagccaaggaaatctcacaacattgatacttttcaat |
44262033 |
T |
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| Q |
518 |
attgctttctctg |
530 |
Q |
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||||||||||||| |
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| T |
44262032 |
attgctttctctg |
44262020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 39470460 - 39470300
Alignment:
| Q |
115 |
gctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctctgtggtacaatatccaatgata |
214 |
Q |
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||||||||||||||||| | ||| |||||||||| | ||||| ||| |||| |||||||||||||||||||||||| |||||| | ||||| ||||| |
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| T |
39470460 |
gctcattgtaactggaccggaatcgaatgcaactcggctggaactgtggagaaccttgatctctctcacaagaatctcagtggtatagtatccggtgata |
39470361 |
T |
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| Q |
215 |
tagaaacactttaaagtctaacctctcttagcttatgttgcaacactttttcatcaccatt |
275 |
Q |
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|| ||| |||| ||| ||| || ||||||| |||||||||||| | |||||||||||||| |
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| T |
39470360 |
tacaaagacttcaaaatcttacttctcttaacttatgttgcaatgcattttcatcaccatt |
39470300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 30087490 - 30087567
Alignment:
| Q |
114 |
agctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatct |
191 |
Q |
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||||||||||||||||||| | || | |||||||||| |||| |||| |||||||| ||||||| |||| |||||| |
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| T |
30087490 |
agctcattgtaactggactggtgtccagtgcaactcagctggagctgtagagaagcttaatctctcacacatgaatct |
30087567 |
T |
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