View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_high_8 (Length: 488)

Name: NF9061_high_8
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_high_8
NF9061_high_8
[»] chr7 (11 HSPs)
chr7 (204-480)||(21161278-21161575)
chr7 (88-147)||(21161575-21161634)
chr7 (323-471)||(16203768-16203918)
chr7 (394-465)||(26762881-26762950)
chr7 (398-472)||(9135335-9135407)
chr7 (394-472)||(29373491-29373567)
chr7 (394-455)||(43172006-43172065)
chr7 (394-472)||(5863232-5863308)
chr7 (323-367)||(16204443-16204487)
chr7 (397-465)||(16204343-16204409)
chr7 (1-40)||(21161684-21161724)
[»] chr8 (12 HSPs)
chr8 (306-457)||(23497042-23497194)
chr8 (395-472)||(30477686-30477761)
chr8 (394-472)||(17698255-17698331)
chr8 (396-464)||(18322996-18323062)
chr8 (396-472)||(13754803-13754877)
chr8 (432-472)||(6928096-6928136)
chr8 (433-474)||(24070895-24070936)
chr8 (432-472)||(24507502-24507542)
chr8 (394-465)||(26916868-26916937)
chr8 (432-462)||(7220617-7220647)
chr8 (323-380)||(6927989-6928045)
chr8 (404-472)||(21416783-21416849)
[»] chr2 (11 HSPs)
chr2 (323-474)||(45258047-45258200)
chr2 (394-474)||(12169016-12169094)
chr2 (394-461)||(3586419-3586484)
chr2 (403-474)||(12127642-12127711)
chr2 (398-472)||(36267543-36267615)
chr2 (394-472)||(19919036-19919112)
chr2 (403-472)||(24499834-24499901)
chr2 (398-465)||(18772300-18772365)
chr2 (232-299)||(18134526-18134593)
chr2 (439-472)||(18770359-18770392)
chr2 (404-472)||(45715040-45715106)
[»] chr5 (10 HSPs)
chr5 (338-471)||(27083148-27083283)
chr5 (394-472)||(26994576-26994652)
chr5 (403-472)||(22903138-22903205)
chr5 (388-472)||(20025328-20025410)
chr5 (403-463)||(34493567-34493625)
chr5 (414-474)||(25333778-25333836)
chr5 (228-380)||(19990871-19991023)
chr5 (398-472)||(8938957-8939028)
chr5 (404-472)||(32418466-32418532)
chr5 (335-367)||(8939063-8939095)
[»] chr4 (8 HSPs)
chr4 (388-474)||(19809744-19809828)
chr4 (394-472)||(47253322-47253398)
chr4 (394-472)||(12683830-12683906)
chr4 (395-472)||(19643747-19643822)
chr4 (432-465)||(2674580-2674613)
chr4 (197-279)||(47253522-47253604)
chr4 (432-465)||(19818745-19818778)
chr4 (395-428)||(50151775-50151808)
[»] chr3 (12 HSPs)
chr3 (396-472)||(9801056-9801130)
chr3 (394-480)||(16704439-16704523)
chr3 (403-464)||(2311813-2311872)
chr3 (397-470)||(21342260-21342331)
chr3 (432-472)||(17143755-17143795)
chr3 (385-472)||(30606973-30607058)
chr3 (403-472)||(28715467-28715534)
chr3 (403-458)||(8122894-8122947)
chr3 (323-374)||(28723668-28723719)
chr3 (436-474)||(28723784-28723822)
chr3 (397-465)||(1770877-1770944)
chr3 (327-375)||(9800984-9801031)
[»] chr6 (14 HSPs)
chr6 (394-465)||(19305516-19305585)
chr6 (394-474)||(34572964-34573042)
chr6 (397-472)||(18147351-18147424)
chr6 (354-471)||(12203568-12203683)
chr6 (307-472)||(3404741-3404908)
chr6 (397-465)||(15480314-15480380)
chr6 (396-463)||(20148369-20148434)
chr6 (396-463)||(22184394-22184459)
chr6 (436-472)||(689867-689903)
chr6 (433-472)||(14080528-14080567)
chr6 (394-463)||(30681046-30681113)
chr6 (396-465)||(14268483-14268551)
chr6 (394-474)||(33596904-33596982)
chr6 (409-472)||(4251029-4251090)
[»] scaffold0023 (1 HSPs)
scaffold0023 (323-472)||(95705-95856)
[»] chr1 (11 HSPs)
chr1 (338-465)||(16030447-16030575)
chr1 (339-472)||(5671815-5671950)
chr1 (397-472)||(34273132-34273205)
chr1 (394-472)||(26977785-26977861)
chr1 (403-464)||(2140927-2140986)
chr1 (431-472)||(5459714-5459755)
chr1 (432-472)||(12177431-12177471)
chr1 (397-472)||(16050439-16050512)
chr1 (433-465)||(22414827-22414859)
chr1 (394-472)||(12032223-12032298)
chr1 (414-459)||(52565638-52565681)
[»] scaffold0360 (1 HSPs)
scaffold0360 (397-472)||(13967-14040)
[»] scaffold0054 (1 HSPs)
scaffold0054 (396-460)||(68774-68836)
[»] scaffold0291 (2 HSPs)
scaffold0291 (397-460)||(15403-15464)
scaffold0291 (432-465)||(8583-8616)
[»] scaffold0505 (1 HSPs)
scaffold0505 (433-472)||(7930-7969)
[»] scaffold0174 (1 HSPs)
scaffold0174 (434-463)||(29286-29315)
[»] scaffold0140 (1 HSPs)
scaffold0140 (394-465)||(6350-6419)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 204 - 480
Target Start/End: Complemental strand, 21161575 - 21161278
Alignment:
Q  204 gatcgatcaatagacgaattccatgttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcaccgtat 303  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  21161575 gatcgatcaatagacgaatcccatgttgacacgtggctcatacttgcaccgccttaaggttccgtgtctgatggaatacgccagctttattgcaccgcat 21161476  T
Q  304 tcaagcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttccta-----atcacacgctgcaaaacttggaa----ttatcttcacgag 394  Q
    |||||||||||| | |||||||||||||||||| |||||||| ||||||| ||||     |||||||||||||||||||||||    |||||||||||||    
T  21161475 tcaagcacgcctccgcgttaggatcacccttcacgtgtcctccaaccgctccctaatcacatcacacgctgcaaaacttggaaacagttatcttcacgag 21161376  T
Q  395 cgcctatgtaagggtgactttgct------------tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactcca 480  Q
    ||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21161375 cgcctatgtaagggtgactttgcttcaccctcaaagtcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttagctcca 21161278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 21161634 - 21161575
Alignment:
Q  88 tgtgttttcttacgcaggtggtttttctctatgtaacaagtttaatttttgattgttctg 147  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21161634 tgtgttttcttacgcaggtggtttttctttatgtaacaagtttaatttttgattgttctg 21161575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 16203918 - 16203768
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 418  Q
    ||||||||||| || |||||||||||||||| |||||||||||||  | ||||  |||     |||||  | ||||| ||||| ||||||||||||| ||    
T  16203918 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttct 16203819  T
Q  419 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttc 471  Q
    ||||||| || ||  ||| ||||||||||| |||||||| ||||||| |||||    
T  16203818 tcacccttaaggt--atggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 465
Target Start/End: Original strand, 26762881 - 26762950
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| || ||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  26762881 gcgcctatatatgggtgtccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacac 26762950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 9135335 - 9135407
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||||||||| |||||||||||||||| ||  |||||||||||||||||||| ||| ||||||| ||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggt--atgattcacttttcacaacagtttttacacactctttct 9135407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 29373567 - 29373491
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| | |||||||| ||||||||||||||| ||  |||||||| ||||||||||| ||||||||||| ||||||    
T  29373567 gcgcctatatgagggtgacattgcttcaccctcaaggt--atgattcaattttcacaacattttctacacactctttct 29373491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 43172006 - 43172065
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacact 455  Q
    |||||||| |||||||||  |||||||||||||||  |||||||||||||||||||||||||    
T  43172006 gcgcctatataagggtgaagttgcttcaccctcaa--tgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 5863308 - 5863232
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  ||||||||| ||||| ||||||||| ||  ||||||||||||| |||||| ||||||||||| ||||||    
T  5863308 gcgcctatacaagggtgacattgctccaccctcaaggt--atgattcactttttacaacattttctacacactctttct 5863232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 16204487 - 16204443
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgc 367  Q
    ||||||||||| || |||||||||||||||| |||||||||||||    
T  16204487 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgc 16204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 16204409 - 16204343
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| ||||||||| ||| ||||||||| || ||  ||| |||||||||||||||||||| |||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggt--atggttcacttttcacaacactttatacacac 16204343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21161724 - 21161684
Alignment:
Q  1 catgttgaagtttgctatac-tttgacttgttgaatggcca 40  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  21161724 catgtcgaagtttgctatacctttgacttgttgaatggcca 21161684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 457
Target Start/End: Original strand, 23497042 - 23497194
Alignment:
Q  306 aagcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga----attatcttcacgagcgcctat 401  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||  |||    |||||||||||||||||||||    
T  23497042 aagcacgccttcacgtgaggatcaccctgcatgtgtcctctaaccgctccctaatcacacg-tgcaaaacccggagacaattatcttcacgagcgcctat 23497140  T
Q  402 gtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacacttt 457  Q
     ||||||||||||||||| ||||||||   |||||||||||| |||||||||||||    
T  23497141 ataagggtgactttgcttaaccctcaa--ggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 30477761 - 30477686
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| |||||||||| || |||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 30477686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 17698255 - 17698331
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| || ||||| | |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  17698255 gcgcctatatatgggtggccttgcttcaccctcaaagtata--attcacttttcacaacactttctacacactctttct 17698331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 18323062 - 18322996
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||| |||||||||| |||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaa--tgtatgattcacttttcacaacattttctacaca 18322996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 472
Target Start/End: Complemental strand, 13754877 - 13754803
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||| |||| ||||||| ||||||||||||| ||  | |||||||||| ||||||||||||||||||| ||||||    
T  13754877 gcctatataagagtgacttagcttcaccctcaaggt--aggattcactttacacaacactttctacacactctttct 13754803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 6928096 - 6928136
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  6928096 gtatgattcacttttcacaacactttctacacactctttct 6928136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 24070936 - 24070895
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  24070936 tatgattcacttctcacaacactttctacacactctttctta 24070895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 24507542 - 24507502
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  24507542 gtatgattcacttttcacaacactttctagacactctttct 24507502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 465
Target Start/End: Original strand, 26916868 - 26916937
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| |||||| ||| ||||||||  ||||| ||  |||| |||||||||||||||||||||||||||    
T  26916868 gcgcctatataagggcgacattgcttcatgctcaaggt--atgactcacttttcacaacactttctacacac 26916937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 462
Target Start/End: Complemental strand, 7220647 - 7220617
Alignment:
Q  432 gtatgattcacttttcacaacactttctaca 462  Q
    |||||||||||||||||||||||||||||||    
T  7220647 gtatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 6927989 - 6928045
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 380  Q
    |||||||| || || ||||||||| |||| ||||||||||||||||||||||| ||||    
T  6927989 aggatcactctacacgtgtcctcttaccg-ttcctaatcacacgctgcaaaacctgga 6928045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 21416849 - 21416783
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  |||||||||||| || ||  | |||||| ||||||||||||||||||||||| ||||||    
T  21416849 aagggtgaacttgcttcacccttaaggt--acgattcatttttcacaacactttctacacactctttct 21416783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 474
Target Start/End: Original strand, 45258047 - 45258200
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 418  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||     ||||| |||||||  ||||| ||||||||||||||||    
T  45258047 aggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgct 45258146  T
Q  419 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||||    
T  45258147 tcaccctcaa--ggtatgattcacttttcacaacactttcgacacattctttctta 45258200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 12169094 - 12169016
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| |||||||| | ||||||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||    
T  12169094 gcgcctatttaagggtggcattgcttcaccctcaaggtata--attcacttttcacaacactttctacacactctttctta 12169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 3586484 - 3586419
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctac 461  Q
    |||||||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  3586484 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctac 3586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 12127642 - 12127711
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||| |||| ||||||||||  ||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  12127642 taaggttgacattgcttcaccaccaaagt--atgattcacttttcacaacactttctacacacacgttctta 12127711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 36267615 - 36267543
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||| |||||||||||| ||||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaaccctttctacacactctttct 36267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 19919036 - 19919112
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||| ||||  |||||||| |||||| ||  ||||||||||||||||||||||||||||| || ||||||    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggt--atgattcacttttcacaacactttctacatactctttct 19919112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 24499901 - 24499834
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  |||||||||||| || ||  |||||||||||||||||||| ||||||||||| ||||||    
T  24499901 taagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacattttctacacactctttct 24499834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 18772365 - 18772300
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||| |||||||||  ||||||||||||||| ||| | |  |||||||||||||||||||||||||||    
T  18772365 ctatataagggtgaacttgcttcaccctcaaggtgcacg--tcacttttcacaacactttctacacac 18772300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 18134593 - 18134526
Alignment:
Q  232 acacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcacc 299  Q
    |||||||||| | | |||||||||||||||| |||| | ||||||||||| |||| ||||| ||||||    
T  18134593 acacgtggcctaaacttgcaccgccttaaggccccgcgcctgaaggaatatgccaactttagtgcacc 18134526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Complemental strand, 18770392 - 18770359
Alignment:
Q  439 tcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||| ||||||    
T  18770392 tcacttttcacaacactttctacacactctttct 18770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 45715106 - 45715040
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||| |||||||| ||||   |||||||||| ||||||| ||||||| ||||||| ||||||    
T  45715106 aagggtgacttagcttcaccttcaa--ggtatgattcaattttcaccacactttttacacactctttct 45715040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 471
Target Start/End: Original strand, 27083148 - 27083283
Alignment:
Q  338 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 433  Q
    |||||||||||| |||  |||||||||||| ||||||| ||||     ||||  ||||| ||||||||| |||||||||||  |||||||||||| ||      
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggt-- 27083245  T
Q  434 atgattcacttttcacaacactttctacacacactttc 471  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27083246 atgattcacttttcacaacactttctacacactctttc 27083283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 26994576 - 26994652
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||| ||||||||||| ||| ||  ||||||||||||||||||||| ||||| |||| ||||||    
T  26994576 gcgcctatataagggtgaccttgcttcacccccaaggt--atgattcacttttcacaacaccttctaaacactctttct 26994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 22903205 - 22903138
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  22903205 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 22903138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 20025410 - 20025328
Alignment:
Q  388 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||| | |||||||||| | ||||||||||||| |   |||||||||||| ||||||||||||||||||| ||||||    
T  20025410 tcacgcgcgcctgtataagggtgacctagcttcaccctcaagga--atgattcactttacacaacactttctacacactctttct 20025328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 34493625 - 34493567
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||||||||| | ||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggt--atgattcacttttcacaacactttctacac 34493567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 25333836 - 25333778
Alignment:
Q  414 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||||||| || |||||    
T  25333836 ttgcttcactctcaaagt--atgattcacttttaacaacactttctacacactctctctta 25333778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 19990871 - 19991023
Alignment:
Q  228 gttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcaccgtattcaagcacgccttcacgttaggat 327  Q
    ||||||| |||||| | | ||||||||||||||||  ||| | ||||||||| || ||| ||||| || |||  || ||| ||  ||| | ||  |||||    
T  19990871 gttgacatgtggcctaaacttgcaccgccttaaggctccgcgcctgaaggaacacaccaactttagtgtaccacatccaaccatccctccgcgcgaggat 19990970  T
Q  328 cacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 380  Q
    |||||| ||  |||| |||||||||| ||||||||||||| || |||||||||    
T  19990971 caccctacacatgtcttctaaccgctccctaatcacacgccgcgaaacttgga 19991023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 8939028 - 8938957
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||| |||||||| |||||||||||||  ||||||||||||||||| | ||||||| ||||||| ||||||    
T  8939028 ctatataacggtgacttagcttcaccctcaa--tgtatgattcacttttc-ccacactttttacacactctttct 8938957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 32418466 - 32418532
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  |||||||| |||||| ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  32418466 aagggtgaacttgcttcatcctcaaggt--atgattcactcttcacaacactctctacacactctttct 32418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 8939095 - 8939063
Alignment:
Q  335 catgtgtcctctaaccgcttcctaatcacacgc 367  Q
    ||||||||||||||||||| |||||||||||||    
T  8939095 catgtgtcctctaaccgctccctaatcacacgc 8939063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 19809828 - 19809744
Alignment:
Q  388 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||| ||||||||||||||||||||| | ||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||    
T  19809828 tcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtata--attcacttttcacaacactttctacacactctttctta 19809744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 47253398 - 47253322
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||| ||||||| ||||||    
T  47253398 gcgcctatataagggtgacttagcttcaccctcaaggt--atgattcacttttcacaacactttttacacactctttct 47253322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 12683906 - 12683830
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||  |||||||||  |||||||||||| || ||  |||||||||||||||||||||||||||||||| ||||||    
T  12683906 gcgcctagataagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacactttctacacactctttct 12683830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 19643822 - 19643747
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| |||||||||  ||| ||||||||||| ||  |||||||||||||||||| ||||||||||||| ||||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggt--atgattcacttttcacaagactttctacacactctttct 19643747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 2674580 - 2674613
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    ||||||||||||||||||||||||||||||||||    
T  2674580 gtatgattcacttttcacaacactttctacacac 2674613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 47253604 - 47253522
Alignment:
Q  197 tgttttggatcgatcaatagacgaattccatgttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaa 279  Q
    |||| |||||||||||  |||  ||| ||| |||||||||||| ||| | ||||||||||||||||  ||| |||||||||||    
T  47253604 tgttctggatcgatcagaagaacaatcccacgttgacacgtggtccaaacttgcaccgccttaaggctccgcgtctgaaggaa 47253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 19818778 - 19818745
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    |||| |||||||||||||||||||||||||||||    
T  19818778 gtataattcacttttcacaacactttctacacac 19818745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 50151775 - 50151808
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaa 428  Q
    ||||||| ||||||||||||||||||||||||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaa 50151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 9801056 - 9801130
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||| |||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 9801130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 16704523 - 16704439
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactcca 480  Q
    |||||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||| | |||||| |||||||    
T  16704523 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctacactctctttctcaactcca 16704439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2311813 - 2311872
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||||||| ||||||||||||||| ||  ||||||||| |||||||||||||||||||||    
T  2311813 taagggtgacattgcttcaccctcaaggt--atgattcacctttcacaacactttctacaca 2311872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 21342260 - 21342331
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacacttt 470  Q
    ||||| ||||||| || || ||||||||||||  |||||||||||||||||||||||||||||| |||| ||||    
T  21342260 cctatataagggtaaccttacttcaccctcaa--tgtatgattcacttttcacaacactttctatacactcttt 21342331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 17143755 - 17143795
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  17143755 gtatgattcacttttcacaacactttctacacactctttct 17143795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 30607058 - 30606973
Alignment:
Q  385 tcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||| |||||||| |||||||| | || |||||||||||| || ||  ||||||||||||||||||||||||| ||| ||||||    
T  30607058 tcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtata--attcacttttcacaacactttctactcactctttct 30606973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 28715467 - 28715534
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||| ||||||| ||||||    
T  28715467 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttatacacactctttct 28715534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 8122894 - 8122947
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttc 458  Q
    |||||||||| ||||||||||||||| ||  ||||||||||||||||||| |||||    
T  8122894 taagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacgctttc 8122947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 28723668 - 28723719
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaa 374  Q
    ||||||||||| |||||||||||||| |||| ||| |||||||| |||||||    
T  28723668 aggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaa 28723719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 28723784 - 28723822
Alignment:
Q  436 gattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  28723784 gattcacttttcacaacattttctacacactctttctta 28723822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 1770944 - 1770877
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| |||||| ||  |||||||| |||||| | | ||||| ||||||||||||||||||||||||||    
T  1770944 cctatataagggcgaacttgcttcatcctcaaggcgcatgat-cacttttcacaacactttctacacac 1770877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 9800984 - 9801031
Alignment:
Q  327 tcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaac 375  Q
    ||||||| ||||||||||||||||| | ||||||||||||| |||||||    
T  9800984 tcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaac 9801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 19305585 - 19305516
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  19305585 gcgcctatttaagggtgaccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacac 19305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 34572964 - 34573042
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| ||||||||||||  ||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||    
T  34572964 gcgcctatataagggtgacttaacttcaccctcaa--tgtatgattcacttttcaccacactttctacacactttttctta 34573042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 18147424 - 18147351
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||    
T  18147424 cctatataagggtgacattgcttcaccct-aaag-gtatgagtcacttttcacaacactttctacacactctttct 18147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 12203568 - 12203683
Alignment:
Q  354 tcctaatcacacgctgcaaaacttggaattatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaaca 453  Q
    |||| |||||| ||||||||||| | |   |||| |||||| || | | ||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  12203568 tcctgatcacatgctgcaaaactcgaagacatctccacgagtgcgtgtataagggtgacttaacttcaccctcaaagt--atgattcacttttcacaaca 12203665  T
Q  454 ctttctacacacactttc 471  Q
    ||||||||| || |||||    
T  12203666 ctttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 472
Target Start/End: Original strand, 3404741 - 3404908
Alignment:
Q  307 agcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatg 402  Q
    ||||||||| ||||  || ||||| || || ||||||||||||| || | |||||||||||||||||||   ||     |||| |||||  ||||||||     
T  3404741 agcacgcctccacgcgagaatcactctacacgtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctata 3404840  T
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| | ||  |||||||||||| ||  |||||||| ||||||||||||||||||||||| ||||||    
T  3404841 taagggtaatttaacttcaccctcaaggt--atgattcatttttcacaacactttctacacactctttct 3404908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 15480314 - 15480380
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| |||||||||||| ||||||| ||||| ||  ||||||||||||||||||||||||||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggt--atgattcacttttcacaacactttctacacac 15480380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 20148434 - 20148369
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||| |||||||||| |||||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacac 20148369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 22184394 - 22184459
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||| |||||||||| |||||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacac 22184459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 689867 - 689903
Alignment:
Q  436 gattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||| ||||||||||||||    
T  689867 gattcacttttcacaacactttatacacacactttct 689903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 14080567 - 14080528
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttct 14080528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 30681113 - 30681046
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||||| ||| |||||| |||||||| |||||| ||  |||||||||||||||||| || ||||||||    
T  30681113 gcgcctatctaaaggtgacattgcttcatcctcaaggt--atgattcacttttcacaatacattctacac 30681046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 14268551 - 14268483
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||| |||||||||||| |||||||||   | |  |||||||||||||||| ||||||||||||||||    
T  14268551 gcctatataagggtgacttagcttcacccctcacga-tatgattcacttttcaaaacactttctacacac 14268483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 33596982 - 33596904
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| |||| ||||  |||||||| |||||| ||  |||||||  |||||||||||||||||||||||  |||||||    
T  33596982 gcgcctatataagagtgaacttgcttcatcctcaaggt--atgattccattttcacaacactttctacacactttttctta 33596904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 4251029 - 4251090
Alignment:
Q  409 tgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||  |  |||||| ||||||||||||||| ||| ||||| ||||||    
T  4251029 tgactttgcttcaccctcaagat--atgatttacttttcacaacactctctccacactctttct 4251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 472
Target Start/End: Original strand, 95705 - 95856
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaatta--tcttc---acgagcgcctatgtaagggtgactttgc 417  Q
    |||||||| || ||||||||||||||||| | ||||||||||||| |||||||| |||  ||  | |||   ||| | |||||| |||||||||| ||||    
T  95705 aggatcactctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgc 95803  T
Q  418 ttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| || ||  |||||||||||||||||||||||||||| ||| ||||||    
T  95804 ttcaccctgaaggt--atgattcacttttcacaacactttctacgcactctttct 95856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 465
Target Start/End: Complemental strand, 16030575 - 16030447
Alignment:
Q  338 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaat---tatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgta 434  Q
    |||| ||||||||||| |||||||||||||  |||||   ||| |   |||||||| | |||||||| |||||||| ||| ||||| ||||||| ||  |    
T  16030575 gtgttctctaaccgctccctaatcacacgccacaaaatccggagtagttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggt--a 16030478  T
Q  435 tgattcacttttcacaacactttctacacac 465  Q
    |||||||||||||||||||||||||||||||    
T  16030477 tgattcacttttcacaacactttctacacac 16030447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 5671950 - 5671815
Alignment:
Q  339 tgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcac-gagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 433  Q
    |||||||| |||||| |||||||||||| |||||||||||||     |||| ||||  | ||| |||| |||| |||||||  ||||||| ||||  |||    
T  5671950 tgtcctcttaccgct-cctaatcacacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaa--tgt 5671854  T
Q  434 atgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  5671853 atgattcacttttcacaacactttctacacactctttct 5671815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 34273205 - 34273132
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||| ||| ||||||||||||||| ||  |||| ||||||| ||||||||||||||||||| ||||||    
T  34273205 cctatataagggcgacattgcttcaccctcaaggt--atgagtcactttacacaacactttctacacactctttct 34273132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 26977861 - 26977785
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| ||||||| |  ||||||||||||||| ||  |||||||| ||||||||| ||||||||||||| ||||||    
T  26977861 gcgcctatataagggtcaaattgcttcaccctcaaggt--atgattcatttttcacaatactttctacacactctttct 26977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2140927 - 2140986
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||||||||| ||||||||||||| ||  ||| |||||||| ||||||||||||||||||    
T  2140927 taagggtgacttagcttcaccctcaaggt--atggttcactttccacaacactttctacaca 2140986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 5459714 - 5459755
Alignment:
Q  431 tgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  5459714 tgtatgattcactttacacaacactttctacacactctttct 5459755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 12177471 - 12177431
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  12177471 gtataattcacttttcacaacactttctacacactctttct 12177431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 16050512 - 16050439
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||| | |||||||| |||||| ||  ||| |||||||||||| ||||||||||||||| ||||||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggt--atggttcacttttcaccacactttctacacactctttct 16050439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 465
Target Start/End: Complemental strand, 22414859 - 22414827
Alignment:
Q  433 tatgattcacttttcacaacactttctacacac 465  Q
    |||||||||||||||||||||||||||||||||    
T  22414859 tatgattcacttttcacaacactttctacacac 22414827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 12032223 - 12032298
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||||| | |||||| |||| || ||||||||| ||| ||||||||||||||||||| ||||||    
T  12032223 gcgcctatataagggtgacttagtttcacc-tcaa-gt-tatgattcattttacacaacactttctacacactctttct 12032298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 52565681 - 52565638
Alignment:
Q  414 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttct 459  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  52565681 ttgcttcaccctcaa-gt-tatgattcacttttcacaacactttct 52565638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 14040 - 13967
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||||  ||||||||||||||| ||  ||||||||||| |||||||||||||||||||| ||||||    
T  14040 cctatataagggtgatcttgcttcaccctcaaggt--atgattcacttctcacaacactttctacacactctttct 13967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 68774 - 68836
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttcta 460  Q
    |||||| |||||||||| ||||||| ||||||| ||  |||||||||||||||||||||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggt--atgattcacttttcacaacactttcta 68836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 15403 - 15464
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttcta 460  Q
    ||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttcta 15464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 8583 - 8616
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    ||||||||||||||||||||||||||||||||||    
T  8583 gtatgattcacttttcacaacactttctacacac 8616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 7969 - 7930
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  7969 tatgattcacttttcacaacactttctacacactctttct 7930  T

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Target: scaffold0174 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 463
Target Start/End: Original strand, 29286 - 29315
Alignment:
Q  434 atgattcacttttcacaacactttctacac 463  Q
    ||||||||||||||||||||||||||||||    
T  29286 atgattcacttttcacaacactttctacac 29315  T

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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 6419 - 6350
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| ||||| |||  ||||||||| ||||| ||  | || |||||||||||||||||||||||||||    
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggt--acgactcacttttcacaacactttctacacac 6350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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