View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_1 (Length: 1038)
Name: NF9061_low_1
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 993; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 993; E-Value: 0
Query Start/End: Original strand, 19 - 1023
Target Start/End: Complemental strand, 38486688 - 38485684
Alignment:
| Q |
19 |
ctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486688 |
ctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaa |
38486589 |
T |
|
| Q |
119 |
ccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486588 |
ccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacctgtaaatatatgttccctcactcccaaaat |
38486489 |
T |
|
| Q |
219 |
agttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486488 |
agttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtt |
38486389 |
T |
|
| Q |
319 |
tgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttacacggtatattt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486388 |
tgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttacacggtatattt |
38486289 |
T |
|
| Q |
419 |
ccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaacataggcaac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486288 |
ccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaacataggcaac |
38486189 |
T |
|
| Q |
519 |
tcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcaatcacatat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38486188 |
tcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcgatcacatat |
38486089 |
T |
|
| Q |
619 |
gtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctg |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486088 |
gtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttgcgagttgataccgtctg |
38485989 |
T |
|
| Q |
719 |
gaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagta |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38485988 |
gaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagta |
38485889 |
T |
|
| Q |
819 |
gtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttc |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38485888 |
gtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttc |
38485789 |
T |
|
| Q |
919 |
atcatcccctctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccag |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38485788 |
atcatcccctctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccag |
38485689 |
T |
|
| Q |
1019 |
ttctg |
1023 |
Q |
| |
|
||||| |
|
|
| T |
38485688 |
ttctg |
38485684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 52 - 402
Target Start/End: Complemental strand, 3685886 - 3685536
Alignment:
| Q |
52 |
aaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcct |
151 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || ||||| || | ||||||||||||||||| || | ||| || | || |||||||||| || | |
|
|
| T |
3685886 |
aaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttcaaagggtttgccagaaatcgctggcccagtgtcacaaaacttgtctctt |
3685787 |
T |
|
| Q |
152 |
gagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaa |
251 |
Q |
| |
|
| | |||||||||||||||||| || ||||| | ||||| ||||||| || | || |||||||| ||||| || ||||||| ||| ||||| |
|
|
| T |
3685786 |
gggatgacatgaaccaagcaagcgacgaaacagagcctgtgaatatattctcacgaacccccaaaatggttggcttcttgataccatggtagacattgaa |
3685687 |
T |
|
| Q |
252 |
ttcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcg |
351 |
Q |
| |
|
|| ||||| ||||| || | ||| || || |||||||| || ||||| || |||||||| || || ||||||||||| || || || || || || || |
|
|
| T |
3685686 |
ctcctccaacagattccgcattttgagagcttcctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgca |
3685587 |
T |
|
| Q |
352 |
tggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
402 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||| || ||||| |||||| |
|
|
| T |
3685586 |
tgattctgattttccggtttcccttctccaagttttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 22 - 677
Target Start/End: Complemental strand, 30121084 - 30120432
Alignment:
| Q |
22 |
gaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccc |
121 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
30121084 |
gaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaaggatttgccaaaaccc |
30120985 |
T |
|
| Q |
122 |
tctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagt |
221 |
Q |
| |
|
|||| |||| |||||| ||||||| ||||| |||||||||||||| ||||||||||| ||| | || || || || |||||||| || || ||||| || |
|
|
| T |
30120984 |
tctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgacacctaaaattgt |
30120885 |
T |
|
| Q |
222 |
tggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttga |
321 |
Q |
| |
|
|||||| || | ||| |||||| | | | ||||| | |||||||| | || ||||| |||||||||||||| ||||| ||||| || ||||| || |
|
|
| T |
30120884 |
tggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgtctatagtctgc |
30120785 |
T |
|
| Q |
322 |
attgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaagggacctggcaattttacacggtatatttcca |
421 |
Q |
| |
|
| || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || ||||| ||||| |||| ||| || | ||||| ||| | |
|
|
| T |
30120784 |
aaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttcaatggacccggcagtttgactctgtatacttcaa |
30120685 |
T |
|
| Q |
422 |
cctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctccctgtgcgaacctcatcaacataggcaactct |
521 |
Q |
| |
|
||||| | |||| ||| || |||||||||||||| ||||| |||| ||| ||| | ||||| || || |||||| ||||| ||||||| |
|
|
| T |
30120684 |
cctccttttccaactgctgatcatacttaacaaggacagagaaata------ctccttcccgtcccttccagtagttctctcatccacatatgcaactcg |
30120591 |
T |
|
| Q |
522 |
tagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatctgacaagcaatcacatatgtg |
621 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
30120590 |
aagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctgagttccataaatctgacaagcaaccacatatgtg |
30120491 |
T |
|
| Q |
622 |
aatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
677 |
Q |
| |
|
|||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
30120490 |
aatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 738 - 1019
Target Start/End: Complemental strand, 30120359 - 30120078
Alignment:
| Q |
738 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
837 |
Q |
| |
|
|||||| || |||||||||||| || || | ||||||||||||||| ||||| | ||| | |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
|
| Q |
838 |
gtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctctcgcctca |
937 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |||||| ||||| |||||||| ||||| | |||| |||||||||||||||||| || | || |
|
|
| T |
30120259 |
gtccgcgatagtgtttggcctcggtaggaagcccacagcctcaaatctctaagtttatcagtccacagatcactgtctttcatcatcccctcccgacgca |
30120160 |
T |
|
| Q |
938 |
ttctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatatcccatcttcattcccagt |
1019 |
Q |
| |
|
| ||||||| |||||||||||| ||||| ||||| |||||||||| |||||| || ||||| | ||| ||||||||| |||| |
|
|
| T |
30120159 |
tcctctccagaaaattcttccactcatcatcataaatagtctgcaaatagtacagggttgaaaccccgtcttcattctcagt |
30120078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
299 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
383 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
|
|
| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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