View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_11 (Length: 567)

Name: NF9061_low_11
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_11
NF9061_low_11
[»] scaffold0009 (2 HSPs)
scaffold0009 (178-550)||(101469-101842)
scaffold0009 (3-81)||(101298-101382)
[»] chr1 (1 HSPs)
chr1 (303-433)||(45784912-45785042)
[»] chr7 (8 HSPs)
chr7 (444-514)||(10281348-10281418)
chr7 (306-418)||(10281461-10281577)
chr7 (79-153)||(47544116-47544190)
chr7 (181-232)||(47528128-47528179)
chr7 (305-386)||(28638543-28638624)
chr7 (167-235)||(47544247-47544316)
chr7 (303-378)||(503625-503700)
chr7 (463-511)||(48014451-48014499)
[»] scaffold0117 (1 HSPs)
scaffold0117 (444-513)||(13593-13662)
[»] scaffold0019 (1 HSPs)
scaffold0019 (308-433)||(64236-64361)


Alignment Details
Target: scaffold0009 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 178 - 550
Target Start/End: Original strand, 101469 - 101842
Alignment:
Q  178 tcttaatgcctaatgacattgcctatcaggatgctttctaatagggaatcggctaaactctcacgaaatagaaagcaaggtcgggt-gttgatgaatgct 276  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | |||||||||||||    
T  101469 tcttaacgcctaatgacattgcctctcaggatgctttctaatagggaatcggctaaactctcaggaaatagaaagcaagctcgtattgttgatgaatgct 101568  T
Q  277 ataaatctttggggctataaatcatttggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggtt 376  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  101569 ataaatctttggggccataaatcatttggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggtt 101668  T
Q  377 cctgtcgaggttaaggttgatacacttggagcaatatatgaaaggggattgattggatgataccataattgaaccatttatcacatattaaacaatattc 476  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  101669 cttgtcgaggttaaggttgatactcttcgagcaatatatgaaaggggattgattggatgataccatgattgaacaatttatcacatattaaacaatattc 101768  T
Q  477 aatgttatatttccattgtgatttccttgattaattaaacaattgtgttttgattattttgtgttcacaattgt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  101769 aatgttatatttccattgtgatttccttgattaattaaacaattgtgctttgattattttgtgttcacaattgt 101842  T

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Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 101298 - 101382
Alignment:
Q  3 agacatttaatccttttgaacttggaaatatgttgttac------gtcaacgacaagtggatccttaggcgaagaggaggcttat 81  Q
    |||||| | |||||| ||||||||||||  |||||||||      |||||||||||||||||||| ||||||||| |||||||||    
T  101298 agacatctgatccttctgaacttggaaacctgttgttacaaccaggtcaacgacaagtggatcctcaggcgaagatgaggcttat 101382  T

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Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 45785042 - 45784912
Alignment:
Q  303 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacact 402  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||| ||| ||||||||| || ||    
T  45785042 tggatatgaatgctaacttgggtggatttgcatctgctttagttaagaatcctgtttgggttatgaatgtggttcctgtccaggctaaggttgacaccct 45784943  T
Q  403 tggagcaatatatgaaaggggattgattgga 433  Q
    ||| |||||||||||||||||| ||||||||    
T  45784942 tggggcaatatatgaaaggggactgattgga 45784912  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 10281418 - 10281348
Alignment:
Q  444 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaattaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10281418 attgaaccatttatcacatattaaacaatattcaatgttatattttcattgtgatttccttgattaattaa 10281348  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 10281577 - 10281461
Alignment:
Q  306 atatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttat----gaacgtggttcctgtcgaggttaaggttgatacac 401  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||| |  |||||||||||    |||||||||||||||| | | ||||||||||||||    
T  10281577 atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttatatatgaacgtggttcctgtccatgctaaggttgatacac 10281478  T
Q  402 ttggagcaatatatgaa 418  Q
    |||||||||||||||||    
T  10281477 ttggagcaatatatgaa 10281461  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 47544116 - 47544190
Alignment:
Q  79 tatgaatggagacaataacgcttctaatgcaaaacgagttaagaggtaacaatattctctgagttcaatatgttt 153  Q
    ||||||| ||||||||||| ||||  ||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47544116 tatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgttt 47544190  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
Q  181 taatgcctaatgacattgcctatcaggatgctttctaatagggaatcggcta 232  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  47528128 taatgcctaatgacattgcctttcaggatgctctctaatagggaatcagcta 47528179  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 28638624 - 28638543
Alignment:
Q  305 gatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgagg 386  Q
    |||||||||||| ||||||| ||||||||| ||||  ||||| |  ||||||||||||| ||||| || ||||| |||||||    
T  28638624 gatatgaatgcttacttgggaggatttgcagctgcaatgattgatgatccagtttgggtcatgaatgttgttccggtcgagg 28638543  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 47544247 - 47544316
Alignment:
Q  167 tccaaacatggtcttaatgcctaatgacattgcc-tatcaggatgctttctaatagggaatcggctaaac 235  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||    ||||||||||| |||||||    
T  47544247 tccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaac 47544316  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 503700 - 503625
Alignment:
Q  303 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcc 378  Q
    ||||||||||||||  ||| |||||||||||| |||| ||| | ||  ||||||||||||||||||| || |||||    
T  503700 tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc 503625  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 48014499 - 48014451
Alignment:
Q  463 attaaacaatattcaatgttatatttccattgtgatttccttgattaat 511  Q
    |||||||||||||||||   ||||||| |||||||||| ||||||||||    
T  48014499 attaaacaatattcaataaaatatttcgattgtgattttcttgattaat 48014451  T

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Target: scaffold0117 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 513
Target Start/End: Complemental strand, 13662 - 13593
Alignment:
Q  444 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaatta 513  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  13662 attgaaccatttatcacatattaatcaatattcaatgttatatttccgttgtaatttccttgattaatta 13593  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 433
Target Start/End: Complemental strand, 64361 - 64236
Alignment:
Q  308 atgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacacttggag 407  Q
    ||||||||| | ||||||||||||||| || |  |  ||||  ||||  ||||||||||||| || |||||| |  | | ||| ||||||||||||||||    
T  64361 atgaatgcttatttgggtggatttgcagcttcacttgttaaatatcctatttgggttatgaatgttgttcctattcaagctaaagttgatacacttggag 64262  T
Q  408 caatatatgaaaggggattgattgga 433  Q
    ||||||||||||| || |||||||||    
T  64261 caatatatgaaagagggttgattgga 64236  T

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