View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_12 (Length: 564)
Name: NF9061_low_12
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 5725324 - 5725858
Alignment:
| Q |
16 |
agagctgtgtggaagataacaggttgcaccataatggtcgatgactggtatgatgagaaggagtttagggacatactaaacttcttcgtaaacagtccaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725324 |
agagctgtgtggaagataacaggttgcaccataatggtcgatgactggtatgatgagaaggagtttagggacatactaaacttcttcgtaaacagtccaa |
5725423 |
T |
|
| Q |
116 |
agggaacattctttttgaagtctgttgaatcagctgatataagttcacctgaagaactatttaagatgatggatgacattgttgaagaagttggggaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725424 |
agggaacattctttttgaagtctgttgaatcagctgatataagttcacctgaagaactatttaagatgatggatgacattgttgaagaagttggggaaga |
5725523 |
T |
|
| Q |
216 |
aaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgca |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725524 |
aaatgttgtccaaattgtgacggacagtgcaacatactatgaaaaggctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgca |
5725623 |
T |
|
| Q |
316 |
acacggtgcattgagatgatactaaaagaatatgagcagatacccatttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725624 |
acacggtgcattgagatgatactaaaagaatatgagcagatacccatttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaa |
5725723 |
T |
|
| Q |
416 |
gtgattctctcatttctctattgcagcactttgccaaaggagtaaatttgtttgggatgg-aactgttatctgtgtcttatattgcttatctttatgctg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5725724 |
gtgattctctcatttctctattgcagcactttgccaaaggagtaaatttgtttgggatggaaactgttatctgtgtcttatattgcttatctttatgctg |
5725823 |
T |
|
| Q |
515 |
tcttcatgagaacagagaagcgttgataagaatgt |
549 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
5725824 |
tcttcatgagaacagagaagcgttgataagaatgt |
5725858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 170 - 446
Target Start/End: Original strand, 4414493 - 4414769
Alignment:
| Q |
170 |
aactatttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtga |
269 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||| |||| | |||| | ||| || |||||||| |
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| T |
4414493 |
aactctttaagatgatggatgaaattgtagaagaggttggg-aagaaaatgttgtccaaattgtgacagacaatacaacctactacaaagttgctggtga |
4414591 |
T |
|
| Q |
270 |
gatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagcagatacccatttataaa |
369 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||| ||||||||||| || || |
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| T |
4414592 |
gatgtagatggtgaaaaggactaggttgtattggacaccttgtgcaacacacacaattgagatgatattggaagactatgagaagatacccattcatgaa |
4414691 |
T |
|
| Q |
370 |
gagacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctc-tattgcagcactt |
446 |
Q |
| |
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||||||| | |||| || ||||||| || |||||| ||||||| | |||||||||| ||| | ||||||||||| |
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| T |
4414692 |
gagacaattacaaaggctaaaagaattttagcctttattcattcaagggcttctctcattcctcgtgttgcagcactt |
4414769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 175 - 335
Target Start/End: Complemental strand, 4377374 - 4377214
Alignment:
| Q |
175 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgt |
274 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | | | || | | || ||||||||||||| |
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|
| T |
4377374 |
tttaagatgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtaacggataatacgacttatttcaaagctgctggtgagatgt |
4377275 |
T |
|
| Q |
275 |
tgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
335 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
4377274 |
tgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgat |
4377214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 4365909 - 4365754
Alignment:
| Q |
87 |
catactaaacttcttcgtaaacagtccaaagggaacattctttttgaagtctgttgaatcagctgatataagtt-----cacctgaagaactatttaaga |
181 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||||||||||| |||| | ||||||| ||| | ||||| |||| ||||||| |
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|
| T |
4365909 |
catactaaactggttagtgaacagtccaaagggaacattctttttgaagtctattgatgcgtctgatat--gttggaatcgcctgagaaactctttaaga |
4365812 |
T |
|
| Q |
182 |
tgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacgga |
239 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||| |
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|
| T |
4365811 |
tgatggatgacgttgttgaagaggttggggaagaaaatgctgtccacattgtgacgga |
4365754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 335
Target Start/End: Complemental strand, 4370309 - 4370058
Alignment:
| Q |
87 |
catactaaacttcttcgtaaacagtccaaagggaacattctttttgaagtctgttgaatcagctgatataagtt-----cacctgaagaactatttaaga |
181 |
Q |
| |
|
|||| ||||||| || || ||||||||||| ||||||||||||||||||||| |||| || ||||||| ||| | ||||| |||| ||| || |
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| T |
4370309 |
cataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatat--gttggaatcgcctgacaaactctttcgga |
4370212 |
T |
|
| Q |
182 |
tgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgttgatgaa |
281 |
Q |
| |
|
| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| | || ||| || | | |||||||||||||||| | |
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|
| T |
4370211 |
ttttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatgga |
4370112 |
T |
|
| Q |
282 |
gaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
335 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||| |||||| ||||||| |
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|
| T |
4370111 |
gaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgat |
4370058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 328
Target Start/End: Complemental strand, 4360514 - 4360269
Alignment:
| Q |
86 |
acatactaaacttcttcgtaaacagtccaaagggaacattctttttgaagtctgttgaatcagctgatataagtt-----cacctgaagaactatttaag |
180 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||||||||||||| || |||| | ||||||| ||| | |||| |||| ||||| |
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|
| T |
4360514 |
acatactaaacttgttactgaacagtccaaagggaacattctttttgaagactattgatgcgtctgatat--gttggaatcgtctgagaaactctttaaa |
4360417 |
T |
|
| Q |
181 |
atgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgttgatga |
280 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||| | || ||| ||||| | || | || |||||||||| |
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|
| T |
4360416 |
atgatggatgacgttgttgaagaggttggggaagaaaatgttgtccacgttgtaacggaatatacaccatactatgtagctgccgctgggatgttgatgg |
4360317 |
T |
|
| Q |
281 |
agaaaaggactaggttgtattggacaccttgtgcaacacggtgcattg |
328 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
4360316 |
cgaaaaggactaggctgtattggacaccttgcgcaacacattgcattg |
4360269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 331
Target Start/End: Complemental strand, 4384947 - 4384791
Alignment:
| Q |
175 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgt |
274 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | | | | | | || ||||||||||||| |
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|
| T |
4384947 |
tttaagatgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtcacggataatacggcttatttcaaagctgctggtgagatgt |
4384848 |
T |
|
| Q |
275 |
tgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgaga |
331 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
4384847 |
tgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgaga |
4384791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 175 - 440
Target Start/End: Complemental strand, 4390057 - 4389791
Alignment:
| Q |
175 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatgctatgaaaaggctggtgagatgt |
274 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||||||||||||| ||| |||||||||| | | | ||| | | ||||||||||||| |
|
|
| T |
4390057 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttgttcaagttgtgacggataatacggcatatttcagagctgctggtgagatgt |
4389958 |
T |
|
| Q |
275 |
tgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagcag---atacccatttataaaga |
371 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||| | |||| || ||| || ||||| ||||| |||| |
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|
| T |
4389957 |
tgatggagaagaggactaggttgtattggacaccttgtg--acacactgcattgagatgatgttggaagattacgagaagaaaatacctgtttatgaaga |
4389860 |
T |
|
| Q |
372 |
gacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctctattgca |
440 |
Q |
| |
|
|| || | |||| ||| || |||| || ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4389859 |
gataattacaaagggtaaaaaaattacaagttttatttattcgagggattctctcatttctctattgca |
4389791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4360581 - 4360539
Alignment:
| Q |
16 |
agagctgtgtggaagataacaggttgcaccataatggtcgatg |
58 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4360581 |
agagctatgtggaagatcacaggttgcagcataatggtcgatg |
4360539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4370377 - 4370335
Alignment:
| Q |
16 |
agagctgtgtggaagataacaggttgcaccataatggtcgatg |
58 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
4370377 |
agagctatgtggaaggtaacaggttgcaccataatggttgatg |
4370335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 4365711 - 4365675
Alignment:
| Q |
282 |
gaaaaggactaggttgtattggacaccttgtgcaaca |
318 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
4365711 |
gaaaaggactaggctgtattggaccccttgtgcaaca |
4365675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 21031588 - 21031640
Alignment:
| Q |
181 |
atgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgt |
233 |
Q |
| |
|
||||||||||||| |||||| ||||| || |||||||||||||||| ||||| |
|
|
| T |
21031588 |
atgatggatgacaatgttgaggaagtgggtcaagaaaatgttgtccacattgt |
21031640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 15658701 - 15658753
Alignment:
| Q |
175 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtcca |
227 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
15658701 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgttgtcca |
15658753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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