View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_14 (Length: 551)
Name: NF9061_low_14
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 256 - 540
Target Start/End: Complemental strand, 42748656 - 42748372
Alignment:
| Q |
256 |
ggtgaacaaccctttatattcaactcctacaaggtttaacttgacttagatttcaaattaaaagcatcaatattattcccaatatgacagcttttattgc |
355 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42748656 |
ggtgaacaaccctttatattcgactcctacaaggtttaatttgacttagatttcaaattaaaagcatcaatattattcccaatatgacagcttttattgc |
42748557 |
T |
|
| Q |
356 |
atattcaaattcaaatagataacaatgctgcagcctgcaagtctgcaacgtagagacctatgtagcaccaacgcttctaattgatggcgtgtaagatgtc |
455 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42748556 |
atattcaaattcaaatacataacaatgctgcagcctgcaagtctgcaacgtagagacctatgtagcaccaacgcttctaattgatggcgtgtaagatgtc |
42748457 |
T |
|
| Q |
456 |
tgacaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcgatgtgtaagtgtgtattgatgtcc |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42748456 |
tgacaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcgatgtgtaagtgtgtattgatgtcc |
42748372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 42748910 - 42748686
Alignment:
| Q |
3 |
gttaacaaagggataaaactaggccctgtagaggaataatgaacaacctctcatcctctgagcaaagggctgctatgtcatagatgtctctatttgtaag |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42748910 |
gttaacaaagggataaaactaggctctgtagaggaataatgaacaacctctcatcctctgagcaaagggctgctatgtcatagatgtctctatttgtaag |
42748811 |
T |
|
| Q |
103 |
cattctgcaaaatagaccatactcatatatttgtaagaattctgcaaaatagaccatattcagatatttggaactttttgtattgatctttaaccagaga |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42748810 |
cattctgcaaaatagaccatattcatatatttgtaagaattttgcaaaatagaccatattcagatatttggaactttttgtattgatctttaaccagaga |
42748711 |
T |
|
| Q |
203 |
tgggaagaacccttacacacaaccc |
227 |
Q |
| |
|
||||||||||| ||| ||||||||| |
|
|
| T |
42748710 |
tgggaagaacctttatacacaaccc |
42748686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 500
Target Start/End: Original strand, 10038440 - 10038488
Alignment:
| Q |
452 |
tgtctgacaccaacacatgtgattaaattcaactattctgttttctcag |
500 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
10038440 |
tgtcggacaccaacacatgtgattatattcaattattctattttctcag |
10038488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 516
Target Start/End: Complemental strand, 3451913 - 3451854
Alignment:
| Q |
457 |
gacaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcg |
516 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||| ||||||| ||||||| |
|
|
| T |
3451913 |
gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgtcg |
3451854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 28322298 - 28322234
Alignment:
| Q |
458 |
acaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcgatgtgt |
522 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||||||| ||||| ||||||||||| |||| |
|
|
| T |
28322298 |
acaccaacacatgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgt |
28322234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University