View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_17 (Length: 521)
Name: NF9061_low_17
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 13137978 - 13138388
Alignment:
| Q |
1 |
tctatgctatatgtaactcttcatttccagtccttacaagatatgtggtccatcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaa |
100 |
Q |
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| T |
13137978 |
tctatgctatatgtaactcttcatttccaattcttacaagatatgtggtccatcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaa |
13138077 |
T |
|
| Q |
101 |
ctcagtttggtttgcaaaaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaactctttaggga |
200 |
Q |
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| T |
13138078 |
ctcagtttggtttgcaagaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaactctttaggga |
13138177 |
T |
|
| Q |
201 |
agaattgtatgcacattgtatcatcaatgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagctaacttaggctt |
300 |
Q |
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| T |
13138178 |
agaattgtatgcacattgtatcatcagtgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagctaacttaggctt |
13138277 |
T |
|
| Q |
301 |
atcccttaatcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaggaatgtgtgagtttgtttgttaaa |
400 |
Q |
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| T |
13138278 |
atcccttaatcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaagaatgtgtgagtttgtttgttaaa |
13138377 |
T |
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| Q |
401 |
ttctaaggagg |
411 |
Q |
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| T |
13138378 |
ttctaaggagg |
13138388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 502
Target Start/End: Original strand, 13138607 - 13138639
Alignment:
| Q |
470 |
gggttccttaaaaatgatcttagaacacttgtt |
502 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13138607 |
gggttccttaaaaatgatcttagaacacttgtt |
13138639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 16473416 - 16473353
Alignment:
| Q |
52 |
atcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaactcagtttggtttgc |
115 |
Q |
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|||||||||| | ||||||||| |||||| | ||||| ||||| ||||| |||||||||||||| |
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| T |
16473416 |
atcctcaatgtagagttgtgatcactgcagccatgataaacattatcaaatcagtttggtttgc |
16473353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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