View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_18 (Length: 517)
Name: NF9061_low_18
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 501
Target Start/End: Original strand, 10765655 - 10766145
Alignment:
| Q |
12 |
acatcaataattgctttaagtatttttgggtcaacctacattatattagggttagnnnnnnnnngtagaggacatattagggttagttttaaaagtatga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
10765655 |
acatcaataattgctttaagtatttttgggtcaacctacattatattagggttagttttttttattgaaggacatattagggttagttttaaaagtatga |
10765754 |
T |
|
| Q |
112 |
taactatttaataatagtgtaattaggcctcaaaatccgccatcacattatatttcaagttttctacccgaaatggtttcttgtattaaataatactcac |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10765755 |
taactatttaataatagtgtaattaggcttcaaaatccggcatcacattatatttcaagttttctacccgaaatggtttcttgtattaaataatactcac |
10765854 |
T |
|
| Q |
212 |
aaaa-ctattcagttatgtcttctatctttaacaaaaaattaagattttttatccaagagattctatttctgaatgctcaccctgtcacagtctatagca |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10765855 |
aaaaactattcagttatgtcttctatctttaacaaaaaattaagattttttatccaagagattctatttctgaatgctcaccctgtcacagtctatagca |
10765954 |
T |
|
| Q |
311 |
aacagtagcacatgaccaagagataagttgttatacatgtgtaaacnnnnnnnnnnnnnnnnnnnnntgtaaggttctatatttgtccaattattttctg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
10765955 |
aacagtagcacatgaccaagagataagttgttatacatgtgtaaacaaataaaaataaaataaaaattgtaaggttctatttttgtccaattattttctg |
10766054 |
T |
|
| Q |
411 |
ttacccatgtgaccaagtgcaaacacagaaacagttgtaacattagtacaaattttgtaatctaggacaaagatgacactgaggtcgagat |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10766055 |
ttacccatgtgaccaagtgcaaacacagaaacagttgtaacattagtacaaattttgtagtctaggacaaagatgacactgaggtcgagat |
10766145 |
T |
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