View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_20 (Length: 496)
Name: NF9061_low_20
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 32475173 - 32474826
Alignment:
| Q |
17 |
agtcacaagtgttcgtattttgcaaaagatgtctgctattggaacacaccgttttagaatgagaatattaatgaata-agttttcacatagtcctgaaac |
115 |
Q |
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| T |
32475173 |
agtcacaagtgtttgtattttgcaaaagatgtctactattggaacacaccgttttagac-------attgtagcatacaggttt----tagtcccgaaac |
32475085 |
T |
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| Q |
116 |
atacgcatgtagaaaacttcagccgaaacttatctggttgttcagtgatcaatgttgttcattgctgttagatatacaacatgtataacttactgtgaaa |
215 |
Q |
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| T |
32475084 |
atacgcatgtagaaaacttcagccgaaacttatctggttgttca-----------------ttgctgttagatatacaacatgtataacttactgtgaaa |
32475002 |
T |
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| Q |
216 |
tgtgacattgccattgttattaataatgaaactttaactaatttactaataagccaacgtgtgcaaaatgattgcttaaatggataccaattgtcgattc |
315 |
Q |
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| T |
32475001 |
tgtgacattgccattgttattaataatgaaacttcaactaatttactaataagccaatgtgtgcaaaatgattgcttaaatagataccgattgtcgattc |
32474902 |
T |
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| Q |
316 |
aacttctgtgnnnnnnnaataaatgaactcaatctttgtcctccatatttgtgttatagattttggattcactatt |
391 |
Q |
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| T |
32474901 |
aacttctgtgtttttttaataaatgaactcaatctttttcctccatatttatgttatagattttggattcactatt |
32474826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 485
Target Start/End: Complemental strand, 32473103 - 32473002
Alignment:
| Q |
385 |
cactattgtatatggtgcattctgtatagtacattgttgaatgaggctattattaaatacattttcacataatcataagtgc-tgtattttgtgaaagtc |
483 |
Q |
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| T |
32473103 |
cactattgaatacggtgcattctgtgtagtacattgttgaatgaggctattattgaatacattttcacataatcataagtgcttgtattttgtgaaaatc |
32473004 |
T |
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| Q |
484 |
tc |
485 |
Q |
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| T |
32473003 |
tc |
32473002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 32475205 - 32475170
Alignment:
| Q |
73 |
gaatgagaatattaatgaataagttttcacatagtc |
108 |
Q |
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| T |
32475205 |
gaatgagaatattaatgaataagttttcacatagtc |
32475170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 387
Target Start/End: Original strand, 46972418 - 46972671
Alignment:
| Q |
136 |
agccgaaacttatctggttgttcagtgatcaatgttgttcattgctgttagatatacaacatgtataacttactgtgaaatgtgacattgccat--tgtt |
233 |
Q |
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| T |
46972418 |
agccgaaacttatctagttgttcaatgatcaatgttgttcattgatatcacatatgcgatatttatggttgattgtgaaatgcgaccttgcaatattgtt |
46972517 |
T |
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| Q |
234 |
attaat-aatgaaactttaactaatttactaataagccaacgtgtgcaaaatgattgcttaaatggataccaattgtcgattcaacttctgtgnnnnnnn |
332 |
Q |
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| T |
46972518 |
atcaatgaatgaaagtttaactaatttactaataagccaacacgtgcaaaatgattgcttaaatatttacggattgtagattcaacttttgt-tttcgtt |
46972616 |
T |
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| Q |
333 |
aataaatgaactcaatctttgtcctccatatttgtgttatagattttggattcac |
387 |
Q |
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| T |
46972617 |
aataaatgaactcaatcttggtcctccataattatatttcagattttggattcac |
46972671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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