View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_23 (Length: 488)

Name: NF9061_low_23
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_23
NF9061_low_23
[»] chr7 (11 HSPs)
chr7 (204-480)||(21161278-21161575)
chr7 (88-147)||(21161575-21161634)
chr7 (323-471)||(16203768-16203918)
chr7 (394-465)||(26762881-26762950)
chr7 (398-472)||(9135335-9135407)
chr7 (394-472)||(29373491-29373567)
chr7 (394-455)||(43172006-43172065)
chr7 (394-472)||(5863232-5863308)
chr7 (323-367)||(16204443-16204487)
chr7 (397-465)||(16204343-16204409)
chr7 (1-40)||(21161684-21161724)
[»] chr8 (12 HSPs)
chr8 (306-457)||(23497042-23497194)
chr8 (395-472)||(30477686-30477761)
chr8 (394-472)||(17698255-17698331)
chr8 (396-464)||(18322996-18323062)
chr8 (396-472)||(13754803-13754877)
chr8 (432-472)||(6928096-6928136)
chr8 (433-474)||(24070895-24070936)
chr8 (432-472)||(24507502-24507542)
chr8 (394-465)||(26916868-26916937)
chr8 (432-462)||(7220617-7220647)
chr8 (323-380)||(6927989-6928045)
chr8 (404-472)||(21416783-21416849)
[»] chr2 (11 HSPs)
chr2 (323-474)||(45258047-45258200)
chr2 (394-474)||(12169016-12169094)
chr2 (394-461)||(3586419-3586484)
chr2 (403-474)||(12127642-12127711)
chr2 (398-472)||(36267543-36267615)
chr2 (394-472)||(19919036-19919112)
chr2 (403-472)||(24499834-24499901)
chr2 (398-465)||(18772300-18772365)
chr2 (232-299)||(18134526-18134593)
chr2 (439-472)||(18770359-18770392)
chr2 (404-472)||(45715040-45715106)
[»] chr5 (10 HSPs)
chr5 (338-471)||(27083148-27083283)
chr5 (394-472)||(26994576-26994652)
chr5 (403-472)||(22903138-22903205)
chr5 (388-472)||(20025328-20025410)
chr5 (403-463)||(34493567-34493625)
chr5 (414-474)||(25333778-25333836)
chr5 (228-380)||(19990871-19991023)
chr5 (398-472)||(8938957-8939028)
chr5 (404-472)||(32418466-32418532)
chr5 (335-367)||(8939063-8939095)
[»] chr4 (8 HSPs)
chr4 (388-474)||(19809744-19809828)
chr4 (394-472)||(47253322-47253398)
chr4 (394-472)||(12683830-12683906)
chr4 (395-472)||(19643747-19643822)
chr4 (432-465)||(2674580-2674613)
chr4 (197-279)||(47253522-47253604)
chr4 (432-465)||(19818745-19818778)
chr4 (395-428)||(50151775-50151808)
[»] chr3 (12 HSPs)
chr3 (396-472)||(9801056-9801130)
chr3 (394-480)||(16704439-16704523)
chr3 (403-464)||(2311813-2311872)
chr3 (397-470)||(21342260-21342331)
chr3 (432-472)||(17143755-17143795)
chr3 (385-472)||(30606973-30607058)
chr3 (403-472)||(28715467-28715534)
chr3 (403-458)||(8122894-8122947)
chr3 (323-374)||(28723668-28723719)
chr3 (436-474)||(28723784-28723822)
chr3 (397-465)||(1770877-1770944)
chr3 (327-375)||(9800984-9801031)
[»] chr6 (14 HSPs)
chr6 (394-465)||(19305516-19305585)
chr6 (394-474)||(34572964-34573042)
chr6 (397-472)||(18147351-18147424)
chr6 (354-471)||(12203568-12203683)
chr6 (307-472)||(3404741-3404908)
chr6 (397-465)||(15480314-15480380)
chr6 (396-463)||(20148369-20148434)
chr6 (396-463)||(22184394-22184459)
chr6 (436-472)||(689867-689903)
chr6 (433-472)||(14080528-14080567)
chr6 (394-463)||(30681046-30681113)
chr6 (396-465)||(14268483-14268551)
chr6 (394-474)||(33596904-33596982)
chr6 (409-472)||(4251029-4251090)
[»] scaffold0023 (1 HSPs)
scaffold0023 (323-472)||(95705-95856)
[»] chr1 (11 HSPs)
chr1 (338-465)||(16030447-16030575)
chr1 (339-472)||(5671815-5671950)
chr1 (397-472)||(34273132-34273205)
chr1 (394-472)||(26977785-26977861)
chr1 (403-464)||(2140927-2140986)
chr1 (431-472)||(5459714-5459755)
chr1 (432-472)||(12177431-12177471)
chr1 (397-472)||(16050439-16050512)
chr1 (433-465)||(22414827-22414859)
chr1 (394-472)||(12032223-12032298)
chr1 (414-459)||(52565638-52565681)
[»] scaffold0360 (1 HSPs)
scaffold0360 (397-472)||(13967-14040)
[»] scaffold0054 (1 HSPs)
scaffold0054 (396-460)||(68774-68836)
[»] scaffold0291 (2 HSPs)
scaffold0291 (397-460)||(15403-15464)
scaffold0291 (432-465)||(8583-8616)
[»] scaffold0505 (1 HSPs)
scaffold0505 (433-472)||(7930-7969)
[»] scaffold0174 (1 HSPs)
scaffold0174 (434-463)||(29286-29315)
[»] scaffold0140 (1 HSPs)
scaffold0140 (394-465)||(6350-6419)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 204 - 480
Target Start/End: Complemental strand, 21161575 - 21161278
Alignment:
Q  204 gatcgatcaatagacgaattccatgttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcaccgtat 303  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  21161575 gatcgatcaatagacgaatcccatgttgacacgtggctcatacttgcaccgccttaaggttccgtgtctgatggaatacgccagctttattgcaccgcat 21161476  T
Q  304 tcaagcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttccta-----atcacacgctgcaaaacttggaa----ttatcttcacgag 394  Q
    |||||||||||| | |||||||||||||||||| |||||||| ||||||| ||||     |||||||||||||||||||||||    |||||||||||||    
T  21161475 tcaagcacgcctccgcgttaggatcacccttcacgtgtcctccaaccgctccctaatcacatcacacgctgcaaaacttggaaacagttatcttcacgag 21161376  T
Q  395 cgcctatgtaagggtgactttgct------------tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactcca 480  Q
    ||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21161375 cgcctatgtaagggtgactttgcttcaccctcaaagtcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttagctcca 21161278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 21161634 - 21161575
Alignment:
Q  88 tgtgttttcttacgcaggtggtttttctctatgtaacaagtttaatttttgattgttctg 147  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21161634 tgtgttttcttacgcaggtggtttttctttatgtaacaagtttaatttttgattgttctg 21161575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 471
Target Start/End: Complemental strand, 16203918 - 16203768
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 418  Q
    ||||||||||| || |||||||||||||||| |||||||||||||  | ||||  |||     |||||  | ||||| ||||| ||||||||||||| ||    
T  16203918 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttct 16203819  T
Q  419 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttc 471  Q
    ||||||| || ||  ||| ||||||||||| |||||||| ||||||| |||||    
T  16203818 tcacccttaaggt--atggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 465
Target Start/End: Original strand, 26762881 - 26762950
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| || ||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  26762881 gcgcctatatatgggtgtccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacac 26762950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 9135335 - 9135407
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||||||||| |||||||||||||||| ||  |||||||||||||||||||| ||| ||||||| ||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggt--atgattcacttttcacaacagtttttacacactctttct 9135407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 29373567 - 29373491
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| | |||||||| ||||||||||||||| ||  |||||||| ||||||||||| ||||||||||| ||||||    
T  29373567 gcgcctatatgagggtgacattgcttcaccctcaaggt--atgattcaattttcacaacattttctacacactctttct 29373491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 455
Target Start/End: Original strand, 43172006 - 43172065
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacact 455  Q
    |||||||| |||||||||  |||||||||||||||  |||||||||||||||||||||||||    
T  43172006 gcgcctatataagggtgaagttgcttcaccctcaa--tgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 5863308 - 5863232
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  ||||||||| ||||| ||||||||| ||  ||||||||||||| |||||| ||||||||||| ||||||    
T  5863308 gcgcctatacaagggtgacattgctccaccctcaaggt--atgattcactttttacaacattttctacacactctttct 5863232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 16204487 - 16204443
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgc 367  Q
    ||||||||||| || |||||||||||||||| |||||||||||||    
T  16204487 aggatcaccctacacgtgtcctctaaccgctccctaatcacacgc 16204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 16204409 - 16204343
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| ||||||||| ||| ||||||||| || ||  ||| |||||||||||||||||||| |||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggt--atggttcacttttcacaacactttatacacac 16204343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21161724 - 21161684
Alignment:
Q  1 catgttgaagtttgctatac-tttgacttgttgaatggcca 40  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  21161724 catgtcgaagtttgctatacctttgacttgttgaatggcca 21161684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 457
Target Start/End: Original strand, 23497042 - 23497194
Alignment:
Q  306 aagcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga----attatcttcacgagcgcctat 401  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||  |||    |||||||||||||||||||||    
T  23497042 aagcacgccttcacgtgaggatcaccctgcatgtgtcctctaaccgctccctaatcacacg-tgcaaaacccggagacaattatcttcacgagcgcctat 23497140  T
Q  402 gtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacacttt 457  Q
     ||||||||||||||||| ||||||||   |||||||||||| |||||||||||||    
T  23497141 ataagggtgactttgcttaaccctcaa--ggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 30477761 - 30477686
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| |||||||||| || |||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 30477686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 17698255 - 17698331
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| || ||||| | |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  17698255 gcgcctatatatgggtggccttgcttcaccctcaaagtata--attcacttttcacaacactttctacacactctttct 17698331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 18323062 - 18322996
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||| |||||||||| |||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaa--tgtatgattcacttttcacaacattttctacaca 18322996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 472
Target Start/End: Complemental strand, 13754877 - 13754803
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||| |||| ||||||| ||||||||||||| ||  | |||||||||| ||||||||||||||||||| ||||||    
T  13754877 gcctatataagagtgacttagcttcaccctcaaggt--aggattcactttacacaacactttctacacactctttct 13754803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 6928096 - 6928136
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  6928096 gtatgattcacttttcacaacactttctacacactctttct 6928136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 24070936 - 24070895
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  24070936 tatgattcacttctcacaacactttctacacactctttctta 24070895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 24507542 - 24507502
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  24507542 gtatgattcacttttcacaacactttctagacactctttct 24507502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 465
Target Start/End: Original strand, 26916868 - 26916937
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| |||||| ||| ||||||||  ||||| ||  |||| |||||||||||||||||||||||||||    
T  26916868 gcgcctatataagggcgacattgcttcatgctcaaggt--atgactcacttttcacaacactttctacacac 26916937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 462
Target Start/End: Complemental strand, 7220647 - 7220617
Alignment:
Q  432 gtatgattcacttttcacaacactttctaca 462  Q
    |||||||||||||||||||||||||||||||    
T  7220647 gtatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 6927989 - 6928045
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 380  Q
    |||||||| || || ||||||||| |||| ||||||||||||||||||||||| ||||    
T  6927989 aggatcactctacacgtgtcctcttaccg-ttcctaatcacacgctgcaaaacctgga 6928045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 21416849 - 21416783
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  |||||||||||| || ||  | |||||| ||||||||||||||||||||||| ||||||    
T  21416849 aagggtgaacttgcttcacccttaaggt--acgattcatttttcacaacactttctacacactctttct 21416783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 474
Target Start/End: Original strand, 45258047 - 45258200
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgct 418  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||     ||||| |||||||  ||||| ||||||||||||||||    
T  45258047 aggatcaccctgcatgtgtcctctaaccgctccctaatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgct 45258146  T
Q  419 tcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||||    
T  45258147 tcaccctcaa--ggtatgattcacttttcacaacactttcgacacattctttctta 45258200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 12169094 - 12169016
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| |||||||| | ||||||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||    
T  12169094 gcgcctatttaagggtggcattgcttcaccctcaaggtata--attcacttttcacaacactttctacacactctttctta 12169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 3586484 - 3586419
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctac 461  Q
    |||||||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  3586484 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctac 3586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 12127642 - 12127711
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||| |||| ||||||||||  ||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  12127642 taaggttgacattgcttcaccaccaaagt--atgattcacttttcacaacactttctacacacacgttctta 12127711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 36267615 - 36267543
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| |||||||||  ||||||||||||||| ||  ||||||||||||||||||| |||||||||||| ||||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaaccctttctacacactctttct 36267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 19919036 - 19919112
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||| ||||  |||||||| |||||| ||  ||||||||||||||||||||||||||||| || ||||||    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggt--atgattcacttttcacaacactttctacatactctttct 19919112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 24499901 - 24499834
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  |||||||||||| || ||  |||||||||||||||||||| ||||||||||| ||||||    
T  24499901 taagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacattttctacacactctttct 24499834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 18772365 - 18772300
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||| |||||||||  ||||||||||||||| ||| | |  |||||||||||||||||||||||||||    
T  18772365 ctatataagggtgaacttgcttcaccctcaaggtgcacg--tcacttttcacaacactttctacacac 18772300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 18134593 - 18134526
Alignment:
Q  232 acacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcacc 299  Q
    |||||||||| | | |||||||||||||||| |||| | ||||||||||| |||| ||||| ||||||    
T  18134593 acacgtggcctaaacttgcaccgccttaaggccccgcgcctgaaggaatatgccaactttagtgcacc 18134526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Complemental strand, 18770392 - 18770359
Alignment:
Q  439 tcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||| ||||||    
T  18770392 tcacttttcacaacactttctacacactctttct 18770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 45715106 - 45715040
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||| |||||||| ||||   |||||||||| ||||||| ||||||| ||||||| ||||||    
T  45715106 aagggtgacttagcttcaccttcaa--ggtatgattcaattttcaccacactttttacacactctttct 45715040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 471
Target Start/End: Original strand, 27083148 - 27083283
Alignment:
Q  338 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 433  Q
    |||||||||||| |||  |||||||||||| ||||||| ||||     ||||  ||||| ||||||||| |||||||||||  |||||||||||| ||      
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggt-- 27083245  T
Q  434 atgattcacttttcacaacactttctacacacactttc 471  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27083246 atgattcacttttcacaacactttctacacactctttc 27083283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 26994576 - 26994652
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||| ||||||||||| ||| ||  ||||||||||||||||||||| ||||| |||| ||||||    
T  26994576 gcgcctatataagggtgaccttgcttcacccccaaggt--atgattcacttttcacaacaccttctaaacactctttct 26994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 22903205 - 22903138
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  22903205 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 22903138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 20025410 - 20025328
Alignment:
Q  388 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||| | |||||||||| | ||||||||||||| |   |||||||||||| ||||||||||||||||||| ||||||    
T  20025410 tcacgcgcgcctgtataagggtgacctagcttcaccctcaagga--atgattcactttacacaacactttctacacactctttct 20025328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 34493625 - 34493567
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||||||||| | ||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggt--atgattcacttttcacaacactttctacac 34493567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 25333836 - 25333778
Alignment:
Q  414 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||||||| || |||||    
T  25333836 ttgcttcactctcaaagt--atgattcacttttaacaacactttctacacactctctctta 25333778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 19990871 - 19991023
Alignment:
Q  228 gttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaatacgccagctttattgcaccgtattcaagcacgccttcacgttaggat 327  Q
    ||||||| |||||| | | ||||||||||||||||  ||| | ||||||||| || ||| ||||| || |||  || ||| ||  ||| | ||  |||||    
T  19990871 gttgacatgtggcctaaacttgcaccgccttaaggctccgcgcctgaaggaacacaccaactttagtgtaccacatccaaccatccctccgcgcgaggat 19990970  T
Q  328 cacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttgga 380  Q
    |||||| ||  |||| |||||||||| ||||||||||||| || |||||||||    
T  19990971 caccctacacatgtcttctaaccgctccctaatcacacgccgcgaaacttgga 19991023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 8939028 - 8938957
Alignment:
Q  398 ctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||| |||||||| |||||||||||||  ||||||||||||||||| | ||||||| ||||||| ||||||    
T  8939028 ctatataacggtgacttagcttcaccctcaa--tgtatgattcacttttc-ccacactttttacacactctttct 8938957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 32418466 - 32418532
Alignment:
Q  404 aagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||  |||||||| |||||| ||  |||||||||| ||||||||||| ||||||||| ||||||    
T  32418466 aagggtgaacttgcttcatcctcaaggt--atgattcactcttcacaacactctctacacactctttct 32418532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 8939095 - 8939063
Alignment:
Q  335 catgtgtcctctaaccgcttcctaatcacacgc 367  Q
    ||||||||||||||||||| |||||||||||||    
T  8939095 catgtgtcctctaaccgctccctaatcacacgc 8939063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 19809828 - 19809744
Alignment:
Q  388 tcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    ||||| ||||||||||||||||||||| | ||||||||||| || ||  ||||||||||||||||||||||||||||| ||||||||    
T  19809828 tcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtata--attcacttttcacaacactttctacacactctttctta 19809744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 47253398 - 47253322
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||| ||||||| ||||||    
T  47253398 gcgcctatataagggtgacttagcttcaccctcaaggt--atgattcacttttcacaacactttttacacactctttct 47253322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 12683906 - 12683830
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||  |||||||||  |||||||||||| || ||  |||||||||||||||||||||||||||||||| ||||||    
T  12683906 gcgcctagataagggtgaacttgcttcacccttaaggt--atgattcacttttcacaacactttctacacactctttct 12683830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 19643822 - 19643747
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| |||||||||  ||| ||||||||||| ||  |||||||||||||||||| ||||||||||||| ||||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggt--atgattcacttttcacaagactttctacacactctttct 19643747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 2674580 - 2674613
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    ||||||||||||||||||||||||||||||||||    
T  2674580 gtatgattcacttttcacaacactttctacacac 2674613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 47253604 - 47253522
Alignment:
Q  197 tgttttggatcgatcaatagacgaattccatgttgacacgtggcccatatttgcaccgccttaaggtcccgtgtctgaaggaa 279  Q
    |||| |||||||||||  |||  ||| ||| |||||||||||| ||| | ||||||||||||||||  ||| |||||||||||    
T  47253604 tgttctggatcgatcagaagaacaatcccacgttgacacgtggtccaaacttgcaccgccttaaggctccgcgtctgaaggaa 47253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 19818778 - 19818745
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    |||| |||||||||||||||||||||||||||||    
T  19818778 gtataattcacttttcacaacactttctacacac 19818745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Original strand, 50151775 - 50151808
Alignment:
Q  395 cgcctatgtaagggtgactttgcttcaccctcaa 428  Q
    ||||||| ||||||||||||||||||||||||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaa 50151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 9801056 - 9801130
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||| |||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacactttctacacactctttct 9801130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 16704523 - 16704439
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttcttaactcca 480  Q
    |||||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||| | |||||| |||||||    
T  16704523 gcgcctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttctacactctctttctcaactcca 16704439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2311813 - 2311872
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||||||| ||||||||||||||| ||  ||||||||| |||||||||||||||||||||    
T  2311813 taagggtgacattgcttcaccctcaaggt--atgattcacctttcacaacactttctacaca 2311872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 21342260 - 21342331
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacacttt 470  Q
    ||||| ||||||| || || ||||||||||||  |||||||||||||||||||||||||||||| |||| ||||    
T  21342260 cctatataagggtaaccttacttcaccctcaa--tgtatgattcacttttcacaacactttctatacactcttt 21342331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 17143755 - 17143795
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  17143755 gtatgattcacttttcacaacactttctacacactctttct 17143795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 30607058 - 30606973
Alignment:
Q  385 tcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||| |||||||| |||||||| | || |||||||||||| || ||  ||||||||||||||||||||||||| ||| ||||||    
T  30607058 tcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtata--attcacttttcacaacactttctactcactctttct 30606973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 28715467 - 28715534
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||  ||| ||||||||||| ||  |||||||||||||||||||||||| ||||||| ||||||    
T  28715467 taagggtgatattgtttcaccctcaaggt--atgattcacttttcacaacactttatacacactctttct 28715534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 8122894 - 8122947
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttc 458  Q
    |||||||||| ||||||||||||||| ||  ||||||||||||||||||| |||||    
T  8122894 taagggtgacattgcttcaccctcaaggt--atgattcacttttcacaacgctttc 8122947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 28723668 - 28723719
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaa 374  Q
    ||||||||||| |||||||||||||| |||| ||| |||||||| |||||||    
T  28723668 aggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaa 28723719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 28723784 - 28723822
Alignment:
Q  436 gattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  28723784 gattcacttttcacaacattttctacacactctttctta 28723822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 1770944 - 1770877
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| |||||| ||  |||||||| |||||| | | ||||| ||||||||||||||||||||||||||    
T  1770944 cctatataagggcgaacttgcttcatcctcaaggcgcatgat-cacttttcacaacactttctacacac 1770877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 9800984 - 9801031
Alignment:
Q  327 tcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaac 375  Q
    ||||||| ||||||||||||||||| | ||||||||||||| |||||||    
T  9800984 tcaccctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaac 9801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 19305585 - 19305516
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| |||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  19305585 gcgcctatttaagggtgaccttgcttcaccctcaaggt--atgattcacttttcacaacactttctacacac 19305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 34572964 - 34573042
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| ||||||||||||  ||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||    
T  34572964 gcgcctatataagggtgacttaacttcaccctcaa--tgtatgattcacttttcaccacactttctacacactttttctta 34573042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 18147424 - 18147351
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||    
T  18147424 cctatataagggtgacattgcttcaccct-aaag-gtatgagtcacttttcacaacactttctacacactctttct 18147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 12203568 - 12203683
Alignment:
Q  354 tcctaatcacacgctgcaaaacttggaattatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaaca 453  Q
    |||| |||||| ||||||||||| | |   |||| |||||| || | | ||||||||||||  |||||||||||||||  ||||||||||||||||||||    
T  12203568 tcctgatcacatgctgcaaaactcgaagacatctccacgagtgcgtgtataagggtgacttaacttcaccctcaaagt--atgattcacttttcacaaca 12203665  T
Q  454 ctttctacacacactttc 471  Q
    ||||||||| || |||||    
T  12203666 ctttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 472
Target Start/End: Original strand, 3404741 - 3404908
Alignment:
Q  307 agcacgccttcacgttaggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcacgagcgcctatg 402  Q
    ||||||||| ||||  || ||||| || || ||||||||||||| || | |||||||||||||||||||   ||     |||| |||||  ||||||||     
T  3404741 agcacgcctccacgcgagaatcactctacacgtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctata 3404840  T
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||| | ||  |||||||||||| ||  |||||||| ||||||||||||||||||||||| ||||||    
T  3404841 taagggtaatttaacttcaccctcaaggt--atgattcatttttcacaacactttctacacactctttct 3404908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 15480314 - 15480380
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    ||||| |||||||||||| ||||||| ||||| ||  ||||||||||||||||||||||||||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggt--atgattcacttttcacaacactttctacacac 15480380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 20148434 - 20148369
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||| |||||||||| |||||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacac 20148369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 22184394 - 22184459
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||| |||||||||| |||||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggt--atgattcacttttcacaacactttctacac 22184459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 689867 - 689903
Alignment:
Q  436 gattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||| ||||||||||||||    
T  689867 gattcacttttcacaacactttatacacacactttct 689903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 14080567 - 14080528
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttct 14080528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 30681113 - 30681046
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacac 463  Q
    |||||||| ||| |||||| |||||||| |||||| ||  |||||||||||||||||| || ||||||||    
T  30681113 gcgcctatctaaaggtgacattgcttcatcctcaaggt--atgattcacttttcacaatacattctacac 30681046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 14268551 - 14268483
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||| |||||||||||| |||||||||   | |  |||||||||||||||| ||||||||||||||||    
T  14268551 gcctatataagggtgacttagcttcacccctcacga-tatgattcacttttcaaaacactttctacacac 14268483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 33596982 - 33596904
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttctta 474  Q
    |||||||| |||| ||||  |||||||| |||||| ||  |||||||  |||||||||||||||||||||||  |||||||    
T  33596982 gcgcctatataagagtgaacttgcttcatcctcaaggt--atgattccattttcacaacactttctacacactttttctta 33596904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 4251029 - 4251090
Alignment:
Q  409 tgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||  |  |||||| ||||||||||||||| ||| ||||| ||||||    
T  4251029 tgactttgcttcaccctcaagat--atgatttacttttcacaacactctctccacactctttct 4251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 472
Target Start/End: Original strand, 95705 - 95856
Alignment:
Q  323 aggatcacccttcatgtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaatta--tcttc---acgagcgcctatgtaagggtgactttgc 417  Q
    |||||||| || ||||||||||||||||| | ||||||||||||| |||||||| |||  ||  | |||   ||| | |||||| |||||||||| ||||    
T  95705 aggatcactctacatgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgc 95803  T
Q  418 ttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| || ||  |||||||||||||||||||||||||||| ||| ||||||    
T  95804 ttcaccctgaaggt--atgattcacttttcacaacactttctacgcactctttct 95856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 465
Target Start/End: Complemental strand, 16030575 - 16030447
Alignment:
Q  338 gtgtcctctaaccgcttcctaatcacacgctgcaaaacttggaat---tatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaaagtgta 434  Q
    |||| ||||||||||| |||||||||||||  |||||   ||| |   |||||||| | |||||||| |||||||| ||| ||||| ||||||| ||  |    
T  16030575 gtgttctctaaccgctccctaatcacacgccacaaaatccggagtagttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggt--a 16030478  T
Q  435 tgattcacttttcacaacactttctacacac 465  Q
    |||||||||||||||||||||||||||||||    
T  16030477 tgattcacttttcacaacactttctacacac 16030447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 5671950 - 5671815
Alignment:
Q  339 tgtcctctaaccgcttcctaatcacacgctgcaaaacttggaa----ttatcttcac-gagcgcctatgtaagggtgactttgcttcaccctcaaagtgt 433  Q
    |||||||| |||||| |||||||||||| |||||||||||||     |||| ||||  | ||| |||| |||| |||||||  ||||||| ||||  |||    
T  5671950 tgtcctcttaccgct-cctaatcacacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaa--tgt 5671854  T
Q  434 atgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  5671853 atgattcacttttcacaacactttctacacactctttct 5671815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 34273205 - 34273132
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||| ||| ||||||||||||||| ||  |||| ||||||| ||||||||||||||||||| ||||||    
T  34273205 cctatataagggcgacattgcttcaccctcaaggt--atgagtcactttacacaacactttctacacactctttct 34273132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 26977861 - 26977785
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| ||||||| |  ||||||||||||||| ||  |||||||| ||||||||| ||||||||||||| ||||||    
T  26977861 gcgcctatataagggtcaaattgcttcaccctcaaggt--atgattcatttttcacaatactttctacacactctttct 26977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 2140927 - 2140986
Alignment:
Q  403 taagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacaca 464  Q
    |||||||||||| ||||||||||||| ||  ||| |||||||| ||||||||||||||||||    
T  2140927 taagggtgacttagcttcaccctcaaggt--atggttcactttccacaacactttctacaca 2140986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 5459714 - 5459755
Alignment:
Q  431 tgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  5459714 tgtatgattcactttacacaacactttctacacactctttct 5459755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 12177471 - 12177431
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  12177471 gtataattcacttttcacaacactttctacacactctttct 12177431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 16050512 - 16050439
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||| | |||||||| |||||| ||  ||| |||||||||||| ||||||||||||||| ||||||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggt--atggttcacttttcaccacactttctacacactctttct 16050439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 465
Target Start/End: Complemental strand, 22414859 - 22414827
Alignment:
Q  433 tatgattcacttttcacaacactttctacacac 465  Q
    |||||||||||||||||||||||||||||||||    
T  22414859 tatgattcacttttcacaacactttctacacac 22414827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 12032223 - 12032298
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    |||||||| |||||||||||| | |||||| |||| || ||||||||| ||| ||||||||||||||||||| ||||||    
T  12032223 gcgcctatataagggtgacttagtttcacc-tcaa-gt-tatgattcattttacacaacactttctacacactctttct 12032298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 52565681 - 52565638
Alignment:
Q  414 ttgcttcaccctcaaagtgtatgattcacttttcacaacactttct 459  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  52565681 ttgcttcaccctcaa-gt-tatgattcacttttcacaacactttct 52565638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 14040 - 13967
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||| |||||||||  ||||||||||||||| ||  ||||||||||| |||||||||||||||||||| ||||||    
T  14040 cctatataagggtgatcttgcttcaccctcaaggt--atgattcacttctcacaacactttctacacactctttct 13967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 68774 - 68836
Alignment:
Q  396 gcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttcta 460  Q
    |||||| |||||||||| ||||||| ||||||| ||  |||||||||||||||||||||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggt--atgattcacttttcacaacactttcta 68836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 15403 - 15464
Alignment:
Q  397 cctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttcta 460  Q
    ||||| |||||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaacactttcta 15464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Original strand, 8583 - 8616
Alignment:
Q  432 gtatgattcacttttcacaacactttctacacac 465  Q
    ||||||||||||||||||||||||||||||||||    
T  8583 gtatgattcacttttcacaacactttctacacac 8616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 7969 - 7930
Alignment:
Q  433 tatgattcacttttcacaacactttctacacacactttct 472  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  7969 tatgattcacttttcacaacactttctacacactctttct 7930  T

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Target: scaffold0174 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 463
Target Start/End: Original strand, 29286 - 29315
Alignment:
Q  434 atgattcacttttcacaacactttctacac 463  Q
    ||||||||||||||||||||||||||||||    
T  29286 atgattcacttttcacaacactttctacac 29315  T

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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 6419 - 6350
Alignment:
Q  394 gcgcctatgtaagggtgactttgcttcaccctcaaagtgtatgattcacttttcacaacactttctacacac 465  Q
    |||||||| ||||| |||  ||||||||| ||||| ||  | || |||||||||||||||||||||||||||    
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggt--acgactcacttttcacaacactttctacacac 6350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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