View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_24 (Length: 476)
Name: NF9061_low_24
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 33389883 - 33390179
Alignment:
| Q |
1 |
tcaatgaggttcatattttcatcttttatgttgcttgctcttgcaatggattgaggactggtgtcaaatatatcagatatggtagtgagggttaaaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33389883 |
tcaatgaggttcatattttcatcttttatgttgcttgctcttgcaatggattgaggactgatgtcaaatatatcagatatggcagtgagggttaaaaagt |
33389982 |
T |
|
| Q |
101 |
ttggagagttagcaaagtatgcaacatatgtgttacaagaaggaggggaattcaaaggacatgagaagttttttccattggtttgtggcaagtaggatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33389983 |
ttggagagttagcaaagtatgcaacatatgtgttacaagaaggaggggaattcaaaggacatgagaagttttttccattggtttgtggcaagtaggatat |
33390082 |
T |
|
| Q |
201 |
gggtggcagaaaagaatatgaatgcatg----aaataaagtgtgagatggaaatatgaaaccgttgttgtcaaaaggtagtgagcaaattaaaggca |
293 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33390083 |
gggtggcagaaaagaatatgagtgcatgaaataaataaagtgtgagatggaaatatgaaaccattgttgtcaaaaggtagtgagcaaattaaaggca |
33390179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 33375458 - 33375691
Alignment:
| Q |
3 |
aatgaggttcatattttcatcttttatgttgcttgctcttgcaatggattgaggactggtgtcaaatatatcagatatggtagtgagggttaaaaagttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33375458 |
aatgaggttcatattttcatcttttatgttgcttgctcttgcaatggattgaggactggtgtcaaatatatcagatatggctgtgagggttaaaaagttt |
33375557 |
T |
|
| Q |
103 |
ggagagttagcaaagtatgcaacatatgtgttacaagaaggaggggaattcaaaggacatgagaagttttttccattggtttgtggc-----aagtagga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
33375558 |
ggagagttagcaaagtatgcaacatatgtgtcacatgaaggagaggaattcaaagtacatgagaagttttttccattggcttgtggcaattgaagtagga |
33375657 |
T |
|
| Q |
198 |
tatgggtggcagaaaagaatatgaatgcatgaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
33375658 |
tatgggtggcagaaaagaatatgagtgtatgaaa |
33375691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 313 - 471
Target Start/End: Original strand, 33390342 - 33390505
Alignment:
| Q |
313 |
tttgtcatatatgttgacagtatgcggttcttgcacaaatggaattgcagtgaaaattctatactgg-----gttttacttttaacgtttcagccaagat |
407 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33390342 |
tttgtcatatatgttgacagcatgcgattcttgcacaaatggaattgcagtgaaaattctatactggagtgggttttacttttaacgtttcagccaagat |
33390441 |
T |
|
| Q |
408 |
tgtctaatttgcttgagtattctagtgccaaatccatcttagggcggctagttgtctctgctac |
471 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33390442 |
tgtctaatttgctcgagtattctagtgccaaatccatcttagggcggctagttgtctttgctac |
33390505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 33383824 - 33384001
Alignment:
| Q |
3 |
aatgaggttcatattttcatcttttatgttgcttgctcttgcaatggattgaggactggtgtcaaatatatcagatatggtagtgagggttaaaaagttt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| || |||||||||| ||||||| |
|
|
| T |
33383824 |
aatgaggttcatattttcatcttttatgttgtttgctcttgcaatggattgaagactagtgtcaaataaat-----------gtgagggttagaaagttt |
33383912 |
T |
|
| Q |
103 |
ggagagttagcaaagtatgcaacatatgtgttacaagaaggaggggaattcaaaggacatgagaagttttttccattggtttgtggcaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
33383913 |
ggagagttagcaaagtatgcaacatatgcgtcacaagaaggaggggaattcaaagggtatgagaagtttgtcccattggtttgtggcaa |
33384001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 365 - 470
Target Start/End: Original strand, 33384293 - 33384398
Alignment:
| Q |
365 |
aaaattctatactgggttttacttttaacgtttcagccaagattgtctaatttgcttgagtattctagtgccaaatccatcttagggcggctagttgtct |
464 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33384293 |
aaaattctatactggattttacttttaacgtttcaatcaagattgtgcaatttgcttgaatattttagtgccaaatccatcttaggacggttagttgtct |
33384392 |
T |
|
| Q |
465 |
ctgcta |
470 |
Q |
| |
|
||||| |
|
|
| T |
33384393 |
ttgcta |
33384398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 471
Target Start/End: Original strand, 33375973 - 33376060
Alignment:
| Q |
384 |
tacttttaacgtttcagccaagattgtctaatttgcttgagtattctagtgccaaatccatcttagggcggctagttgtctctgctac |
471 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| || | || |||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
33375973 |
tacttttaacgtttcagctaagattgtgcaatttgcttgaatactataatgccaaatccattttaggacggctagttgtctttgctac |
33376060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University