View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_27 (Length: 473)
Name: NF9061_low_27
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 26790385 - 26790825
Alignment:
| Q |
15 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcaggtaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
26790385 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacctcaggaaccataacagttgcaggtaa |
26790484 |
T |
|
| Q |
115 |
caatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790485 |
caatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
26790584 |
T |
|
| Q |
215 |
tgcaatggtaaaattaaacaagcacattgatgaattcatataataaattatattataattggccaatatattcattaaaggatcaaccttgtttttacct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790585 |
tgcaatggtaaaattaaacaagcacattgatgaattcatataataaattatattataattggccaatatattcattaaaggatcaaccttgtttttacct |
26790684 |
T |
|
| Q |
315 |
tgcttgtgacaatctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790685 |
tgcttgtgacaatctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaa |
26790784 |
T |
|
| Q |
415 |
ttcgtttttaacctataccaagaacaccatatattaaaata |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26790785 |
ttcgtttttaacctataccaagaacaccatatattaaaata |
26790825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 26817095 - 26817507
Alignment:
| Q |
15 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcaggtaa |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |
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|
| T |
26817095 |
ttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaa |
26817194 |
T |
|
| Q |
115 |
caatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
214 |
Q |
| |
|
|| | |||||||||||||||||||||||| || |||||||||||| ||| |||||||||| || ||||||||| || ||||||| |||||||||||||| |
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|
| T |
26817195 |
cagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatataacttcttccacaaagacactttc |
26817294 |
T |
|
| Q |
215 |
tgcaatggtaaaattaaacaagcacattgatgaattcatataataaattatattataattggccaatatattcattaaaggatcaaccttgtttttacct |
314 |
Q |
| |
|
|||||| | | |||||||||| |||| ||||||| | || |||| ||| |||||||| | | | | ||||| |||||| || | |||||| |
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|
| T |
26817295 |
tgcaatagacatattaaacaaggacatgcatgaatttagatcataagttaaattataatcgactagtgaattca-acaaggattaa---aataattacct |
26817390 |
T |
|
| Q |
315 |
tgcttgtgacaatctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaa |
414 |
Q |
| |
|
||||| | | |||||||||| | |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || |
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|
| T |
26817391 |
tgcttctaagaatctccatagccatttttctaaagagattggctggcccacatgaccatcgatgttgttggtacctataagccttaaatgtacttggcaa |
26817490 |
T |
|
| Q |
415 |
ttcgtttttaacctata |
431 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
26817491 |
ttcatttttaacctata |
26817507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 38 - 431
Target Start/End: Original strand, 26784040 - 26784431
Alignment:
| Q |
38 |
agggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcaggtaacaatatgcaatagaacacaaatg |
137 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
26784040 |
agggtgatgatggtagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatg |
26784139 |
T |
|
| Q |
138 |
tgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttctgcaatggtaaaattaaacaagc |
237 |
Q |
| |
|
||| ||| || ||||||||||| || | |||||||||||||||||| |||| | |||||| ||||||||||||||||| || | |||||||| ||| |
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|
| T |
26784140 |
tgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaaagacactttctgccatagacaaattaaattagc |
26784239 |
T |
|
| Q |
238 |
acattgatga--attcatataataaattatattataattggccaatatattcattaaaggatcaaccttgtttttaccttgcttgtgacaatctccataa |
335 |
Q |
| |
|
| || |||| ||| ||| |||| ||| ||| ||| | | | | ||||||| || || ||||| |||||||| |||||| ||||||||||| |
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|
| T |
26784240 |
agatgaatgaatatttttatcataatttaaattgtaagtaggtagtgtattcatcaagagaccaacc----aattaccttgtttgtgagaatctccataa |
26784335 |
T |
|
| Q |
336 |
caatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtacttggtaattcgtttttaacctata |
431 |
Q |
| |
|
||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||| |
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|
| T |
26784336 |
tcattttcctgaaaagattggccggtccacatgaccatcgatgttgttggtatctataggcatttaaagtactgggcaattcatttttaacctata |
26784431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 26830738 - 26830944
Alignment:
| Q |
15 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcaggtaa |
114 |
Q |
| |
|
|||| ||||||||||| || | |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26830738 |
ttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacagttgcaggtaa |
26830837 |
T |
|
| Q |
115 |
caatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
214 |
Q |
| |
|
|| ||||||||||| |||||||||| || ||| |||||||||| |||| |||||||||||||||||||| || || ||||||| |||||||||||||| |
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|
| T |
26830838 |
cacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaaagacactttc |
26830937 |
T |
|
| Q |
215 |
tgcaatg |
221 |
Q |
| |
|
||||||| |
|
|
| T |
26830938 |
tgcaatg |
26830944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 26831030 - 26831152
Alignment:
| Q |
309 |
ttaccttgcttgtgacaatctccataacaatttttctgaaaagatttgctggcccacatgaccatcgatgttgttggtacctataggcctttaaagtact |
408 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| |
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|
| T |
26831030 |
ttaccttgtttgtgacaatctccattaccatttttctgaaaagattggctggtccacatgaccatcgatgttgttggtacctaaaggcttttaatgtact |
26831129 |
T |
|
| Q |
409 |
tggtaattcgtttttaacctata |
431 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
26831130 |
tggcaattcgtttttaacctata |
26831152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 41920580 - 41920374
Alignment:
| Q |
15 |
ttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttaggaaccacaacctcaggtaccataacagttgcaggtaa |
114 |
Q |
| |
|
|||| |||||||| || |||||||| ||||| | ||||| | |||||||| ||||||||| || || |||| |||||||||| ||| |||||||||| |
|
|
| T |
41920580 |
ttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtag |
41920481 |
T |
|
| Q |
115 |
caatatgcaatagaacacaaatgtgtgtatatggaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacactttc |
214 |
Q |
| |
|
| |||||||| |||||||| || | || || | | | || |||| |||||| |||||||||| | ||||| ||||||| |||| ||||||||| |
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|
| T |
41920480 |
aacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttc |
41920381 |
T |
|
| Q |
215 |
tgcaatg |
221 |
Q |
| |
|
||||||| |
|
|
| T |
41920380 |
tgcaatg |
41920374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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