View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_28 (Length: 472)
Name: NF9061_low_28
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 57 - 454
Target Start/End: Complemental strand, 43110187 - 43109791
Alignment:
| Q |
57 |
tatagtgttggaggataaaaagtaagtaagaataaattaaccattcaaaaagaagnnnnnnnnnngtaacattaccttaagttacaccaatttattttct |
156 |
Q |
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| T |
43110187 |
tatagtgttggaggataaaaagtaagtaagaataaattaaccattcaaaaagaa--aaaaaaaaggtaacattaccttaagttacaccaatttattttcg |
43110090 |
T |
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| Q |
157 |
gctcccattgacatttcaataaagaagcaggatatttcatctctgtcaagagtttgcatcttagctcttaaggaatcgaaattagttaccatgtcatacg |
256 |
Q |
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| T |
43110089 |
gctcccattgacatttcaataaagaagcaggatatttcatctctgtcaagagtttgcatcttagctcttaaggaatcgaaattagttaccatgtcatacg |
43109990 |
T |
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| Q |
257 |
tgatacataaatttataatgcaattaatcatttcacactgctctatttggactctttatttttgggttacaaagatattaacacagttttcgcaggtgca |
356 |
Q |
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| T |
43109989 |
tgatacataaatttataatgcaattaatcatttcacactgctctatttggactctttatttttgggttacaaagatattaacacagttttcgccggtgca |
43109890 |
T |
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| Q |
357 |
tgacaatgaccaacgagttccctcattcaaacaagagtttttccacaatattcaagagcttaattcctt-aagaaaaatagaaatgttagggtcacacc |
454 |
Q |
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| T |
43109889 |
tgacaatgactaacgagttccctcattcaaacaagagtttttccacaatattcaagagcttaattccttaaaaaaaaatagaaatgctagggtctcacc |
43109791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 43111246 - 43111202
Alignment:
| Q |
17 |
atttgaatatgcttttcctaaaagacactaattttacatatatag |
61 |
Q |
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| T |
43111246 |
atttgaatatgcttttcctaaaagacactaattttacatatatag |
43111202 |
T |
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