View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_30 (Length: 439)

Name: NF9061_low_30
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_30
NF9061_low_30
[»] chr2 (4 HSPs)
chr2 (210-405)||(33400959-33401154)
chr2 (298-371)||(18482614-18482687)
chr2 (96-158)||(2103902-2103963)
chr2 (285-367)||(12072365-12072447)
[»] chr5 (2 HSPs)
chr5 (18-281)||(33046263-33046515)
chr5 (347-405)||(33046203-33046261)
[»] chr4 (1 HSPs)
chr4 (218-392)||(49006220-49006392)
[»] chr6 (3 HSPs)
chr6 (96-147)||(609849-609900)
chr6 (298-367)||(15035896-15035965)
chr6 (110-158)||(20711955-20712003)
[»] chr3 (5 HSPs)
chr3 (110-158)||(54407394-54407442)
chr3 (107-149)||(32741110-32741152)
chr3 (96-149)||(33426351-33426404)
chr3 (113-145)||(42098716-42098748)
chr3 (110-158)||(50939471-50939519)
[»] chr8 (2 HSPs)
chr8 (285-367)||(7773440-7773522)
chr8 (113-158)||(23606858-23606903)
[»] chr7 (3 HSPs)
chr7 (96-149)||(29241541-29241594)
chr7 (96-149)||(36698755-36698808)
chr7 (99-147)||(38190500-38190548)
[»] chr1 (2 HSPs)
chr1 (113-158)||(9173258-9173303)
chr1 (96-144)||(16139961-16140009)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 210 - 405
Target Start/End: Complemental strand, 33401154 - 33400959
Alignment:
Q  210 cactttccctaacctcactccttacggtcgtgttcctttctttcaaccctcttattctcagttctctccaacctagtgtccccgcccaacctccatctct 309  Q
    |||||||||||| ||| ||| |||| || ||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  33401154 cactttccctaatctctctcgttacagtggtgtttctttctttcaaacctcttattctcagttctccccaaccttgtgtccccgcccaacctccatctct 33401055  T
Q  310 cagccgtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaa 405  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33401054 cagccgtgcaccgccacacacacccgtcaccaccaccaatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaa 33400959  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 18482687 - 18482614
Alignment:
Q  298 acctccatctctcagccgtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcctctag 371  Q
    |||||||||||||||||||||| ||||||||| ||| || |||||||| |||| ||||| ||| ||||||||||    
T  18482687 acctccatctctcagccgtgcaacgccacacataccaataaccaccactaatccaaccttcatctatcctctag 18482614  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 2103902 - 2103963
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    |||||||||||| ||||| |||||| |||||||||||| ||| ||||||||| | ||||||||    
T  2103902 agggccgttcttagggag-tgcaaagagctcaaccgagctggacctcccaaagtgatgggcct 2103963  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 12072365 - 12072447
Alignment:
Q  285 gtgtccccgcccaacctccatctctcagccgtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcct 367  Q
    |||| ||| ||| ||||||||||||||||| |||||  ||||||||||  || ||||||||||||| ||| | ||| ||||||    
T  12072365 gtgttccctcccgacctccatctctcagccatgcactaccacacacactgataaccaccaccaatccaacatacatctatcct 12072447  T

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Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 33046515 - 33046263
Alignment:
Q  18 aattttgcatcttttaagtgagaggatatgatcaacaagaccttaacaaaagttctaacattaagtgtacaaactgagagggccgttcttggggaggtgc 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |         ||| |||||||||||||||    
T  33046515 aattttgcatcttttaagtgagaggacatgatcaacaagaccttaacaaaagttctaacattaagtgtacta---------gccattcttggggaggtgc 33046425  T
Q  118 aaacagctcaaccgagttgggcctcccaaattcatgggcct-nnnnnnnttgtagtccaatacccatccaacttaaagcnnnnnnnnnnnnnncactttc 216  Q
    |||||||||||||||| |||||||||||| |||||||||||        ||||||||||| ||||||| ||||||||||              |||||||    
T  33046424 aaacagctcaaccgagctgggcctcccaagttcatgggcctaaaaaagattgtagtccaaaacccatcaaacttaaagc---aaaaaaaaaaacactttc 33046328  T
Q  217 cctaacctcactccttacggtcgtgttcctttctttcaaccctcttattctcagttctctccaac 281  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||    
T  33046327 cctaacctcactccttacagtcgtgtttctttctttcaaccatcttattctcagttctccccaac 33046263  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 33046261 - 33046203
Alignment:
Q  347 aatcaaacctccatatatcctctagttctcctttctttgattttttattgaacaccaaa 405  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33046261 aatcaaacctccatatatcctctagttcttctttctttgattttttattgaacaccaaa 33046203  T

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Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 218 - 392
Target Start/End: Original strand, 49006220 - 49006392
Alignment:
Q  218 ctaacctcactccttacggtcgtgttcctttctttcaaccctcttattctcagttctctcc-aacctagtgtccccgcccaacctccatctc--tcagcc 314  Q
    |||||||||||||| ||||||||||| |||||||     | |||| |||||||||||| || ||||| | ||||||||||||||||||||||  ||||||    
T  49006220 ctaacctcactcctcacggtcgtgtttctttctt-----cttcttcttctcagttctcccctaacctcgcgtccccgcccaacctccatctctctcagcc 49006314  T
Q  315 gtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcctctagttctcctttctttgatttttt 392  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49006315 gtgcgccgccacacacaccagtcaccaccaccaatcaaacctccatatatcctgtagttctcctttctttgatttttt 49006392  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 609900 - 609849
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaa 147  Q
    |||||||||||| |||| ||||||| |||||||||||| |||||||||||||    
T  609900 agggccgttctttgggaagtgcaaagagctcaaccgagctgggcctcccaaa 609849  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 15035965 - 15035896
Alignment:
Q  298 acctccatctctcagccgtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcct 367  Q
    ||||||||||||||||||| ||||||||||  ||||  | ||||||||||||| ||| | ||| ||||||    
T  15035965 acctccatctctcagccgtccaccgccacatgcacctgtaaccaccaccaatccaacattcatctatcct 15035896  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 20712003 - 20711955
Alignment:
Q  110 ggaggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    |||||||||||||||||||| ||| ||||||||||  | ||||||||||    
T  20712003 ggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcct 20711955  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 54407442 - 54407394
Alignment:
Q  110 ggaggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    |||||||||||||||||||| ||||||||||||||  | ||||||||||    
T  54407442 ggaggtgcaaacagctcaacagagttgggcctccctcagtcatgggcct 54407394  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 32741110 - 32741152
Alignment:
Q  107 tggggaggtgcaaacagctcaaccgagttgggcctcccaaatt 149  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  32741110 tggggaggtgcaaacagctctaccgagctgggcctccccaatt 32741152  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 33426351 - 33426404
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaatt 149  Q
    |||||||| | ||||||||||||||||||||||  ||| |||||||||| ||||    
T  33426351 agggccgtccatggggaggtgcaaacagctcaatggagctgggcctccccaatt 33426404  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 42098716 - 42098748
Alignment:
Q  113 ggtgcaaacagctcaaccgagttgggcctccca 145  Q
    |||||||||||||||| ||||||||||||||||    
T  42098716 ggtgcaaacagctcaaacgagttgggcctccca 42098748  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 50939519 - 50939471
Alignment:
Q  110 ggaggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    |||||||||||||||||||| ||| ||||||||||  | ||||||||||    
T  50939519 ggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcct 50939471  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 7773440 - 7773522
Alignment:
Q  285 gtgtccccgcccaacctccatctctcagccgtgcaccgccacacacacccatcaccaccaccaatcaaacctccatatatcct 367  Q
    |||| ||| |||||||||||||||||||||| ||||| ||||| | |||  | ||||||||||||| ||| | ||| ||||||    
T  7773440 gtgttccctcccaacctccatctctcagccgcgcaccaccacataaaccgctaaccaccaccaatccaacatacatctatcct 7773522  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 23606903 - 23606858
Alignment:
Q  113 ggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||    
T  23606903 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcct 23606858  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 29241594 - 29241541
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaatt 149  Q
    |||||||  |||||||||||||||||||||| || ||| |||||||||| ||||    
T  29241594 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaatt 29241541  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 36698808 - 36698755
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaatt 149  Q
    |||||||  |||||||||||||||||||||| || ||| |||||||||| ||||    
T  36698808 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaatt 36698755  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 38190548 - 38190500
Alignment:
Q  99 gccgttcttggggaggtgcaaacagctcaaccgagttgggcctcccaaa 147  Q
    ||||||||| |||  ||||||| |||||||||||| |||||||||||||    
T  38190548 gccgttctttggggagtgcaaagagctcaaccgagctgggcctcccaaa 38190500  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 9173303 - 9173258
Alignment:
Q  113 ggtgcaaacagctcaaccgagttgggcctcccaaattcatgggcct 158  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||    
T  9173303 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcct 9173258  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 16139961 - 16140009
Alignment:
Q  96 agggccgttcttggggaggtgcaaacagctcaaccgagttgggcctccc 144  Q
    |||| ||| |||| || |||||||||||||||| |||||||||||||||    
T  16139961 aggggcgtccttgagggggtgcaaacagctcaaacgagttgggcctccc 16140009  T

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