View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_31 (Length: 432)
Name: NF9061_low_31
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45315334 - 45315550
Alignment:
| Q |
1 |
attatattttattatgttttagatttaatatgtaataattttcaaaaggttactctaataaattatataatagtatgtgaataaagccgtggaagtgcaa |
100 |
Q |
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| T |
45315334 |
attatattttattatgttttagatttaatatgtaataattttcaaaaagttactctaataaattatataatagtatgtgaataaagccgtggaagtgcaa |
45315433 |
T |
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| Q |
101 |
agcaagaagattatgactagtaaatttacaatatggtgactctgcaatgctatccaattgttgattccagctttgggcaaacaatattctacatttgtcc |
200 |
Q |
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| T |
45315434 |
agcaagaagattatgactagtaaatttacaatatggtgactctgcaatgctatccaattgttgattccagctttgggcaaacaatattctacatttgtcc |
45315533 |
T |
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| Q |
201 |
tccaaatgcattgccaa |
217 |
Q |
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| T |
45315534 |
tccaaatgcattgccaa |
45315550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 237 - 415
Target Start/End: Original strand, 45315547 - 45315725
Alignment:
| Q |
237 |
ccaaagcaaataaaatgtgttgcaattgtgacaatgtgccactcaaaaactggattcctcagttgtaggacgagtcaagaagtatctcaagctgttaaca |
336 |
Q |
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| T |
45315547 |
ccaaagcaaataaaatgtgttgcaattgtgacaatgtgccactcaaaaactggattcctcagttgtaggacgagtcaagaagtatctcaagctgttaaca |
45315646 |
T |
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| Q |
337 |
agaacctgccagataggtacacatgcattttcagttcagtattcataaactaattaagtgtcatttaatgtatagcatg |
415 |
Q |
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| T |
45315647 |
agaacctgccagataggtacacatgcattttcagttcagtattcataaactaattaagtgtcatttaatgtatagcatg |
45315725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 967092 - 967158
Alignment:
| Q |
279 |
tcaaaaactggattcctcagttgtaggacgagtcaagaagtatctcaagctgttaacaagaacctgc |
345 |
Q |
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| T |
967092 |
tcaaaaactggattcctcagttgccggacgcctcaagaaatatctcaagctgttagcaagaacctgc |
967158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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