View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_32 (Length: 426)
Name: NF9061_low_32
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 31881347 - 31880916
Alignment:
| Q |
1 |
aatgtcaaagactttttcgggccagactttgtatttgtccattttcaggaacctctcatattggcctcgggtggggaaacgacttgggtcatatggtggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31881347 |
aatgtcaaagactttttcgggccagactttgtatttgtccattttcaggaacctctcatattggcctcgggtggggaaacgacttgggtcatatggtggt |
31881248 |
T |
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| Q |
101 |
ggtgtggatgagg------cagatttgcctcttgggcgtttggtaccaacagttttgggttgcgatttcggtgccatttgcaaaacaaccaggaaatgcc |
194 |
Q |
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| T |
31881247 |
ggtgtggatgaggatgaggcagatttgcctcttgggcgtttggtaccaacagttttggattgcgatttcggtgccatctgcaaaataaccatgaaatacc |
31881148 |
T |
|
| Q |
195 |
aacatatagaatagaaagaattagaataggcatggaataaaacattaaaataaaatttcgctatcagcgaaattcaactcgaaatctgggcaaattttgc |
294 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
31881147 |
aacatatagaatagaaagaattagaacaggcatggaataaaacattaaaataaaatttcgttatcagcgaaattcaactcaaaatctgggcaaattttgc |
31881048 |
T |
|
| Q |
295 |
cattagcgaagaaatttcgctatcaacgaatttcttcgcgattgcaattttccagattttcaaaatctttgttcttgcaatttttcaacacaatctagca |
394 |
Q |
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| T |
31881047 |
cattaacgaagaaatttcgctattagcgaatttcttcgcgattgcaattttccagattttcaaaatctttgttcttgcaatttttcaacacaatccagca |
31880948 |
T |
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| Q |
395 |
tatttcaacaccaatttcacccctatatttct |
426 |
Q |
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| T |
31880947 |
tatttcaacaccaatttcacccctatatttct |
31880916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 14469759 - 14469690
Alignment:
| Q |
167 |
gccatttgcaaaacaaccaggaaatgccaacatatagaatagaaagaattagaataggcatggaataaaa |
236 |
Q |
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| T |
14469759 |
gccatctgcaaaacaacgaggaatttccaacatagaacatagaaagaattagaataggtatggaaaaaaa |
14469690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 15039807 - 15039773
Alignment:
| Q |
382 |
acacaatctagcatatttcaacaccaatttcaccc |
416 |
Q |
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| T |
15039807 |
acacaatctagcatatttcaacaccaattttaccc |
15039773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 22097271 - 22097311
Alignment:
| Q |
264 |
aaattcaactcgaaatctgggcaaattttgccattagcgaa |
304 |
Q |
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| T |
22097271 |
aaattcaacccaaaatctgggcaaatttcgccattagcgaa |
22097311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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