View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_36 (Length: 402)
Name: NF9061_low_36
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 26621883 - 26621474
Alignment:
| Q |
5 |
cacctcaaacctaccaccaatcatcgcatcactcaaagcatattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26621883 |
cacctcaaacctaccaccaatcatcgcatcactcaaagcatattagtaaaaggaaatgaagaaagaatactcgggtggactagaccaaaactgaaggatg |
26621784 |
T |
|
| Q |
105 |
cacaaaagaagcataatcaattgtcttat---taaaaaccttacctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgtag------- |
194 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26621783 |
cataaaagaagcataatcaattgtcttataattaaaaaccttacctataaaacttactgagataaaaccaaggtgaagagaaaccgagtgtagtgctcaa |
26621684 |
T |
|
| Q |
195 |
----------aagttagcaaaatttatgctaaggtagatcaattcattcatagtaagtaaattcaagaaactatgaggaatagcctcccaccattggtag |
284 |
Q |
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| T |
26621683 |
cccaaacaaaaagttagcaaaatttatgctaaggtagatcaattcattcatagtaaatacattcaagaaactatgaggaatagcctcccaccattggtag |
26621584 |
T |
|
| Q |
285 |
ttcagttgttcaaatggggtgaaggttggcaagcttgtgagcgcattgagtgacttctctataaatgtgagacaagatgaaagttatctttatgtgagac |
384 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26621583 |
tt-----gttcaaatggggtgaaggttggcaagcttgtgagcgcattgagtgacttctctataaatgtgagacacgatgaaagttatctttatgtgagac |
26621489 |
T |
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| Q |
385 |
ctacacaatcaaatc |
399 |
Q |
| |
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| T |
26621488 |
ctacacaatcaaatc |
26621474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 26609317 - 26608923
Alignment:
| Q |
10 |
caaacctaccaccaatcatcgcatcactcaaagcatattagtaaaaggaaatgaagaaagaatacttgggtggactagaccaaaactgaaggatgcacaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||| | || ||||||||| |
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| T |
26609317 |
caaacctaccaccaatcatcgcatcactcaaagcatattagtaaaaggaaacaaagaaacaatactcgggtggactatgtcaaagcccaatgatgcacaa |
26609218 |
T |
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| Q |
110 |
aagaagcataatcaattgtcttattaaaaaccttacctataaaacttactgagataaaaccaaggtgaagagaaaacgagtgt---------------ag |
194 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| || ||||| ||| || ||||||||||||||||||||||||||||||| | |
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| T |
26609217 |
aagatgcataatcaattgtcttattaaaaaccttatctgtaaaatttagtgggataaaaccaaggtgaagagaaaacgagtgtaatgctcaacaaataaa |
26609118 |
T |
|
| Q |
195 |
aagttagcaaaatttatgctaaggtagatcaattcattcatagtaagtaaattcaagaaactatgaggaatagcctcccaccattggtagttcagttgtt |
294 |
Q |
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|||||| ||||||||||||| ||||||||||||| ||| |||||| || |||||||| | ||||||||||||||||||||||||||| | ||||| |
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| T |
26609117 |
aagttaacaaaatttatgctcaggtagatcaattatttcgtagtaaatacattcaagatattatgaggaatagcctcccaccattggt-----aattgtt |
26609023 |
T |
|
| Q |
295 |
caaatggggtgaaggttggcaagcttgtgagcgcattgagtgacttctctataaatgtgagacaagatgaaagttatctttatgtgagacctacacaatc |
394 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||| |
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| T |
26609022 |
caaatgatgcgaaggttggcaagcttgttagcgcattgagtgacttctctataaatgtgagacacgatgaaagttatctttatgtgaaagctacgcaatc |
26608923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 195 - 383
Target Start/End: Complemental strand, 26619694 - 26619503
Alignment:
| Q |
195 |
aagttagcaaaatttatgctaaggtagatcaattcattcatagtaagtaaattcaagaaa------ctatgaggaatagcctcccaccattggtagttca |
288 |
Q |
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|||||| | ||||||||||| |||||||||||||| ||| |||||| || |||||||| | |||||||||||||||||||||||||| || |
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| T |
26619694 |
aagttaactaaatttatgctcaggtagatcaattctttcgtagtaaatacattcaagataataatactatgaggaatagcctcccaccattga-----ca |
26619600 |
T |
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| Q |
289 |
gttgttcaaatggggtgaaggttggcaagcttgtgagcgcattgagtgacttctct--ataaatgtgagacaagatgaaagttatctttatgtgaga |
383 |
Q |
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| T |
26619599 |
attgttaaagtgatgcaaaggttggcaagcttgttagcgcattgagtgacttctctctataaatgtgagacacgatgaaagttatctttatgtgaga |
26619503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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