View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_38 (Length: 398)
Name: NF9061_low_38
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 50644404 - 50644778
Alignment:
| Q |
9 |
agcagagagaaaggccaacaataattaatacaagaaaacagtgaaagaaaactaagcagttaatgttaaatgatgacgatttgaatccacaacttgaaac |
108 |
Q |
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| T |
50644404 |
agcaaagagaaaggccaacaataattaatacaagaaaacagtgaaagaaaactaagcagttaatgttaaatgatgacgatttgaatccacaacttgaaac |
50644503 |
T |
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| Q |
109 |
ctcaggctcccattaagataatcaaattatataaatgaaagttggtgtgcctccggaatcggtagaacctgagtttcttttgtgaagaagaggggaaata |
208 |
Q |
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| T |
50644504 |
ctcaggctcccattaagataatcaaattatataaatgaaagttggtgtgcctccggaatcggtagaacctgagtttcttttgtgaagaagaggggaaata |
50644603 |
T |
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| Q |
209 |
caagtaaactatgaatattaagatagaatcatcagctccaacagaagttaagaaaaggtctgataactcaacaaatcatctgctatgaaggtaacacatg |
308 |
Q |
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| T |
50644604 |
caagtaaactatgaatattaagatagaatcatcagctccaacagaagttaagaaaaggtctgataactcaacaaatcatctgctatgaaggtaacacatg |
50644703 |
T |
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| Q |
309 |
tannnnnnnnactctcttcctaaacaaaactcaataccttagtaaaaccttgcagaggaaagacagggagaaggt |
383 |
Q |
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| T |
50644704 |
tatttttttcactctcttcctaaacaaaacccaataccttagtaaaaccttgcagaggaaagacagggagaaggt |
50644778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 12048275 - 12048245
Alignment:
| Q |
239 |
atcagctccaacagaagttaagaaaaggtct |
269 |
Q |
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| T |
12048275 |
atcagctccaacagaagttaagaaaaggtct |
12048245 |
T |
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