View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_40 (Length: 386)

Name: NF9061_low_40
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_40
NF9061_low_40
[»] chr1 (10 HSPs)
chr1 (11-367)||(16101315-16101672)
chr1 (11-364)||(14654840-14655194)
chr1 (6-140)||(16104766-16104900)
chr1 (6-139)||(19656889-19657022)
chr1 (11-139)||(14650840-14650969)
chr1 (11-139)||(14660631-14660760)
chr1 (11-139)||(17478215-17478343)
chr1 (25-139)||(29287704-29287817)
chr1 (71-139)||(17652807-17652875)
chr1 (68-139)||(47050059-47050130)
[»] chr5 (6 HSPs)
chr5 (6-363)||(5518751-5519108)
chr5 (177-291)||(38978534-38978649)
chr5 (6-141)||(27197778-27197914)
chr5 (31-139)||(42786077-42786185)
chr5 (19-137)||(15599416-15599535)
chr5 (300-367)||(38979104-38979167)
[»] chr3 (7 HSPs)
chr3 (23-155)||(7688409-7688541)
chr3 (11-139)||(5705065-5705193)
chr3 (6-139)||(28104380-28104514)
chr3 (6-139)||(28058009-28058143)
chr3 (6-139)||(28068434-28068568)
chr3 (33-139)||(19435605-19435710)
chr3 (69-117)||(17954288-17954336)
[»] scaffold0016 (1 HSPs)
scaffold0016 (122-319)||(76660-76857)
[»] chr2 (10 HSPs)
chr2 (6-139)||(10416508-10416641)
chr2 (6-139)||(4698464-4698597)
chr2 (127-227)||(9310540-9310639)
chr2 (6-140)||(808176-808310)
chr2 (33-139)||(2588428-2588533)
chr2 (71-139)||(44324742-44324810)
chr2 (223-319)||(9306019-9306115)
chr2 (69-117)||(45333308-45333356)
chr2 (127-161)||(20702588-20702622)
chr2 (68-144)||(10481980-10482055)
[»] chr6 (12 HSPs)
chr6 (127-283)||(27684718-27684874)
chr6 (6-141)||(33063677-33063812)
chr6 (13-127)||(30130911-30131025)
chr6 (6-139)||(27527812-27527946)
chr6 (5-139)||(33056197-33056334)
chr6 (25-130)||(15969961-15970066)
chr6 (34-139)||(28041304-28041408)
chr6 (71-139)||(22014634-22014702)
chr6 (19-136)||(6952786-6952903)
chr6 (68-140)||(25477664-25477735)
chr6 (194-245)||(16692837-16692888)
chr6 (69-117)||(14011684-14011732)
[»] chr7 (3 HSPs)
chr7 (6-140)||(28804121-28804255)
chr7 (11-150)||(26525364-26525503)
chr7 (69-117)||(36263730-36263778)
[»] chr4 (5 HSPs)
chr4 (22-140)||(5358102-5358221)
chr4 (19-136)||(30873893-30874010)
chr4 (33-139)||(27560628-27560733)
chr4 (45-139)||(51534234-51534327)
chr4 (45-139)||(18693730-18693823)
[»] chr8 (4 HSPs)
chr8 (6-140)||(28602613-28602747)
chr8 (6-139)||(15925502-15925635)
chr8 (6-139)||(4706151-4706284)
chr8 (69-117)||(18983071-18983119)
[»] scaffold0713 (1 HSPs)
scaffold0713 (6-117)||(1277-1388)
[»] scaffold0002 (4 HSPs)
scaffold0002 (47-144)||(10306-10403)
scaffold0002 (6-137)||(406455-406586)
scaffold0002 (6-137)||(423827-423957)
scaffold0002 (13-62)||(412530-412579)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-140)||(115262-115391)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-139)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (6-140)||(3957-4091)
scaffold0654 (6-140)||(5309-5445)
[»] scaffold0406 (1 HSPs)
scaffold0406 (39-141)||(4129-4229)
[»] scaffold0007 (1 HSPs)
scaffold0007 (71-117)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 16101315 - 16101672
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  16101315 atcattttaagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccg 16101414  T
Q  111 gtcacgaaattgaattttgggtcgtgacaaagttggtatcagagctc-ggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctag 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  16101415 gtcacgatattgaattttgggtcgtgacaaagttggtatcagagctctggttgtaggtcctactagctgcagacatagaatgaaaatagattcttgttag 16101514  T
Q  210 taaattgtgaaccgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgat 309  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||| | | ||||||||||||    
T  16101515 taaattgtgaactgcggcaccatttacttgcaaaaatctatttgcatcctatggtagtgtcatttgttgtccaatcttgttatttcttttggtctttgat 16101614  T
Q  310 ttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtg 367  Q
    | |||| |||||||||| ||||| |||||| ||||  |||||||||||||||||||||    
T  16101615 tggtcttactttgtttgttgtcttgtcctaattttggtcaattttctttcattcggtg 16101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 14654840 - 14655194
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  14654840 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14654939  T
Q  111 gtcacgaaattgaatttt-gggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctag 209  Q
    |||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14654940 gtcacgattgtgaatttttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaacgaaaatagattcttgctag 14655039  T
Q  210 taaattgtgaaccgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgat 309  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| | | |||||||||||     
T  14655040 taaattgtgaaccgcggcaccatttacttgcaaaaatctatttggattctatggtagtgtcatttgttgtccaatcttattatctcttttggtctttgaa 14655139  T
Q  310 ttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcg 364  Q
    |||| | | |||||||| |||||||||||||||||  ||||||||||||||||||    
T  14655140 ttgttttattttgtttgttgtctcgtcctatttttggtcaattttctttcattcg 14655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 16104766 - 16104900
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  16104766 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtg 16104865  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
     ||||||||||| ||||||||||||||||||||||    
T  16104866 cgccggtcacgatattgaattttgggtcgtgacaa 16104900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 19657022 - 19656889
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19657022 tggatatcattataagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtg 19656923  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgaca 139  Q
     ||||||||||| ||||||| |||||||||||||    
T  19656922 cgccggtcacgatattgaatcttgggtcgtgaca 19656889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 14650840 - 14650969
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  14650840 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14650939  T
Q  111 gtcacgaaattgaa-ttttgggtcgtgaca 139  Q
    |||||||   |||| |||||||||||||||    
T  14650940 gtcacgattgtgaatttttgggtcgtgaca 14650969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 14660631 - 14660760
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  14660631 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14660730  T
Q  111 gtcacgaaattgaa-ttttgggtcgtgaca 139  Q
    |||||||   |||| |||||||||||||||    
T  14660731 gtcacgattgtgaatttttgggtcgtgaca 14660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 17478343 - 17478215
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| ||||    
T  17478343 atcattttaagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccg 17478244  T
Q  111 gtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||   |||||||||||||||||||    
T  17478243 gtcacgattgtgaattttgggtcgtgaca 17478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 29287817 - 29287704
Alignment:
Q  25 aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa 124  Q
    ||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||   ||||    
T  29287817 aagtcaaattgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaa 29287719  T
Q  125 ttttgggtcgtgaca 139  Q
    |||||||||||||||    
T  29287718 ttttgggtcgtgaca 29287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 17652875 - 17652807
Alignment:
Q  71 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  17652875 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 17652807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 47050130 - 47050059
Alignment:
Q  68 gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    ||||||| ||||| |||||||||||| ||||||| ||| ||| ||||||    |||||||||||||||||||    
T  47050130 gtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtcgtgaca 47050059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 5519108 - 5518751
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||  || |||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||| |||||||||||    
T  5519108 tggatatcattttaagtgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtg 5519009  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttg 205  Q
     |||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  5519008 cgccggtcacgattgtgaattttgggtcgtgacaaagttggtatcagagcccggttgtaggtcctaataactgcagacatagaattaaaatagattcttg 5518909  T
Q  206 ctagtaaattgtgaaccgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctt 305  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||    
T  5518908 ctagtaaattgtgaaccgcggcaccatttacttgcaagaatctatttgcattctatggtagtgttatttgttgtccaatcttattatttcttttggtctt 5518809  T
Q  306 tgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattc 363  Q
    ||| |||||||||||||||||  |||||||| ||| |||  ||| |||||||||||||    
T  5518808 tgaattgtctcactttgtttgtcgtctcgtcttatatttggtcagttttctttcattc 5518751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 38978534 - 38978649
Alignment:
Q  177 tgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcggcaccatttactttc-aaaaatctatttgcattctatggtagtgtcatttg 275  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  38978534 tgcagacacagagtgaaaatagattcttgctagtaaattgtgagccgcggcaccatttacttgcaaaaaatctacttgcattctatggtagtgtcatttg 38978633  T
Q  276 ttgtccgatcttatta 291  Q
    |||| | |||||||||    
T  38978634 ttgttcaatcttatta 38978649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 27197914 - 27197778
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||| ||| ||||||| ||||||||| |||||||||||    
T  27197914 tggatatcattttaagtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtg 27197815  T
Q  106 tgccggtcacgaaattgaa-ttttgggtcgtgacaaa 141  Q
     |||| ||||||   |||| |||||||||||||||||    
T  27197814 cgccgatcacgattgtgaatttttgggtcgtgacaaa 27197778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 42786077 - 42786185
Alignment:
Q  31 atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg 130  Q
    |||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||   | ||||||||    
T  42786077 atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattttgg 42786176  T
Q  131 gtcgtgaca 139  Q
    |||||||||    
T  42786177 gtcgtgaca 42786185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 15599416 - 15599535
Alignment:
Q  19 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 118  Q
    |||||||| |||| ||| |||| || |||||| | |  ||||||| || |||||||||||||||| ||||||||| ||||||||||| | | |||||||     
T  15599416 aagtgaaattcaaattggaaatagtctaaatttttgcgtgtcaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgat 15599515  T
Q  119 attga-attttgggtcgtga 137  Q
     ||||  |||||||||||||    
T  15599516 tttgagtttttgggtcgtga 15599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 38979104 - 38979167
Alignment:
Q  300 ggtctttgatttgtctcactttgtttgatgtctcgtcctattttttatcaattttctttcattcggtg 367  Q
    ||||||||| |||||||||||||||    ||||||| ||||||||  |||||||||||||||||||||    
T  38979104 ggtctttgaattgtctcactttgtt----gtctcgttctatttttggtcaattttctttcattcggtg 38979167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 7688541 - 7688409
Alignment:
Q  23 gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7688541 gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattg 7688442  T
Q  123 aattttgggtcgtgacaaagttggtatcagagc 155  Q
    |||||| ||||||||||||||||||||||||||    
T  7688441 aattttaggtcgtgacaaagttggtatcagagc 7688409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 5705193 - 5705065
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||| | ||||    
T  5705193 atcattctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccg 5705094  T
Q  111 gtcacgaaattgaattttgggtcgtgaca 139  Q
    ||||||| |||||||||||||||||||||    
T  5705093 gtcacgatattgaattttgggtcgtgaca 5705065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 28104380 - 28104514
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||||||||||||| || | ||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| ||    
T  28104380 tggatatcattttaagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatg 28104479  T
Q  106 tgccggtcacgaaattgaa-ttttgggtcgtgaca 139  Q
     ||||||||||||  |||| |||||||||||||||    
T  28104480 cgccggtcacgaatgtgaatttttgggtcgtgaca 28104514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 28058143 - 28058009
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||| ||||||||| || | ||||||||||||||||||  ||||| | ||||||||||||||||||||| |||||||||||    
T  28058143 tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtg 28058044  T
Q  106 tgccggtcacgaaattgaa-ttttgggtcgtgaca 139  Q
     ||||||||| ||  |||| |||||||||||||||    
T  28058043 cgccggtcacaaatgtgaatttttgggtcgtgaca 28058009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 28068568 - 28068434
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||| ||||||||| || | ||||||||||||||||||  ||||| | ||||||||||||||||||||| |||||||||||    
T  28068568 tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtg 28068469  T
Q  106 tgccggtcacgaaattgaa-ttttgggtcgtgaca 139  Q
     ||||||||| ||  |||| |||||||||||||||    
T  28068468 cgccggtcacaaatgtgaatttttgggtcgtgaca 28068434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19435605 - 19435710
Alignment:
Q  33 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 132  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||| |||| ||| ||| ||||||||||| |||||||||||   ||||||||||||    
T  19435605 ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttgggt 19435703  T
Q  133 cgtgaca 139  Q
    |||||||    
T  19435704 cgtgaca 19435710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 17954336 - 17954288
Alignment:
Q  69 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||| ||||    
T  17954336 tcaataggcttgccgggttagaatgttctagttcgtgtgccggttacga 17954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 122 - 319
Target Start/End: Original strand, 76660 - 76857
Alignment:
Q  122 gaattttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaac 221  Q
    ||||||||  ||||||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  76660 gaattttgaatcgtgacaaagttggtatcagagcatggtagtaggtcctaataggtgcagacatagaatgaaaatagattcttgctagtaaattgtgaac 76759  T
Q  222 cgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcact 319  Q
    |||| |||||||||||| | |||||||||| ||||| | ||||||||| | || |||| | ||||| | || | | ||||||||||||||||||||||    
T  76760 cgcgacaccatttacttgcgaaaatctattagcattatgtggtagtgttacttattgttcaatcttgtgatttcttttggtctttgatttgtctcact 76857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 10416508 - 10416641
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  10416508 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtg 10416607  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgaca 139  Q
     ||||||||||| |||||||||||||||||||||    
T  10416608 cgccggtcacgatattgaattttgggtcgtgaca 10416641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 4698464 - 4698597
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||    
T  4698464 tggatatcattacaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatg 4698563  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgaca 139  Q
     |||||||||||||||||||||||||||||||||    
T  4698564 cgccggtcacgaaattgaattttgggtcgtgaca 4698597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 9310639 - 9310540
Alignment:
Q  127 ttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcgg 226  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9310639 ttgggtcgtgacaaagttgatatcagagcccggttgtaggtcctaatagctgcagacat-gaatgaaaatagattcttgctagtaaattgtgaaccgcgg 9310541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 808310 - 808176
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||| ||||  || |||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  808310 tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtg 808211  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
     |||||||||||   ||||||||||||||||||||    
T  808210 cgccggtcacgattgtgaattttgggtcgtgacaa 808176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 2588428 - 2588533
Alignment:
Q  33 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 132  Q
    |||||||||||||||| ||||||| | |||| || |||||||||||||||||||||||||| ||||||||||| |||| ||||||   ||||||||||||    
T  2588428 ttgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttgggt 2588526  T
Q  133 cgtgaca 139  Q
    |||||||    
T  2588527 cgtgaca 2588533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 44324742 - 44324810
Alignment:
Q  71 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  44324742 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 44324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 9306115 - 9306019
Alignment:
Q  223 gcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattatatttgttggtctttgatttgtctcact 319  Q
    |||||||||||||||| |||||||||||| |||||||| ||| |||||| ||||||||| ||||| | || ||  ||||| ||||||| ||||||||    
T  9306115 gcggcaccatttacttgcaaaaatctattagcattctacggttgtgtcacttgttgtccaatcttgtgattttatttggtttttgattggtctcact 9306019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 45333308 - 45333356
Alignment:
Q  69 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||    
T  45333308 tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacga 45333356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 20702622 - 20702588
Alignment:
Q  127 ttgggtcgtgacaaagttggtatcagagctcggtt 161  Q
    ||||||||||||||||||||||||||||| |||||    
T  20702622 ttgggtcgtgacaaagttggtatcagagcccggtt 20702588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 10482055 - 10481980
Alignment:
Q  68 gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacaaagtt 144  Q
    |||| ||||||||| |||||||| |||  ||||| || || |||||||||  | |||||||||||||||||||||||    
T  10482055 gtcattaggcttgctggactaggttgcattagtttgtatgtcggtcacgat-tagaattttgggtcgtgacaaagtt 10481980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 27684718 - 27684874
Alignment:
Q  127 ttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcgg 226  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  27684718 ttgggtcgtgacaaagttggtatcagagcccggttttaggtccaaatagctgcagacatagagtgataatagatttttgctagtaaattgtgaaccgcgg 27684817  T
Q  227 caccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccga 283  Q
    |||||||||||  |||||| ||||| | | ||||||||||| |||||||||||||||    
T  27684818 caccatttactcgcaaaaagctattagaactctatggtagtctcatttgttgtccga 27684874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 33063677 - 33063812
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||     
T  33063677 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgta 33063776  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaaa 141  Q
     |||||||| || |||||||||||||||||||||||    
T  33063777 cgccggtcatgatattgaattttgggtcgtgacaaa 33063812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 30130911 - 30131025
Alignment:
Q  13 cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||| |    
T  30130911 cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgat 30131010  T
Q  113 cacgaaattgaattt 127  Q
    |||||||||||||||    
T  30131011 cacgaaattgaattt 30131025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 27527812 - 27527946
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  27527812 tggatatcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtg 27527911  T
Q  106 tgccggtcacgaaattgaa-ttttgggtcgtgaca 139  Q
     | |||||||||   |||| |||||||||||||||    
T  27527912 cgtcggtcacgattgtgaatttttgggtcgtgaca 27527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 33056197 - 33056334
Alignment:
Q  5 atggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtc---aataggcttgccggactaggatgctctagtt 101  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||   ||||||||| |||||||||| | ||||||||    
T  33056197 atggatatcattttaagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagtt 33056296  T
Q  102 cgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||| ||||||||||| ||||||||||||||| |||||    
T  33056297 cgtgcgccggtcacgatattgaattttgggtcttgaca 33056334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
Q  25 aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa 124  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||| |||| |||| |||||| |||||||||||   ||||    
T  15970066 aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaa 15969967  T
Q  125 ttttgg 130  Q
    ||||||    
T  15969966 ttttgg 15969961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 28041304 - 28041408
Alignment:
Q  34 tgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtc 133  Q
    ||||||||||||||||||||||| | |||| || ||||||| |||| ||| ||||||||| ||||||||||| |||||||||||   |||||||||||||    
T  28041304 tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc 28041402  T
Q  134 gtgaca 139  Q
    ||||||    
T  28041403 gtgaca 28041408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 22014634 - 22014702
Alignment:
Q  71 aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  22014634 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 22014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 6952786 - 6952903
Alignment:
Q  19 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 118  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||| || ||||||| ||||| |  |||||| || ||||||| |||  ||||||| ||     
T  6952786 aagtgaaagttaatttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggat 6952885  T
Q  119 attgaattttgggtcgtg 136  Q
     || ||||||||||||||    
T  6952886 tttaaattttgggtcgtg 6952903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 25477735 - 25477664
Alignment:
Q  68 gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| ||||   |||| |||||||||||||||    
T  25477735 gtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgacaa 25477664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 16692888 - 16692837
Alignment:
Q  194 aatagattcttgctagtaaattgtgaaccgcggcaccatttactttcaaaaa 245  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  16692888 aatagatttttgctagtaaattgtgaaccacggcaccgtttactttcaaaaa 16692837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 14011684 - 14011732
Alignment:
Q  69 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    |||||||||||||||| |||| ||| ||||||||||| |||| ||||||    
T  14011684 tcaataggcttgccgggctagaatgttctagttcgtgcgccgatcacga 14011732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 28804121 - 28804255
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| |||||||||  |||||| |||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||    
T  28804121 tggatatcattttaagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtg 28804220  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
     ||||||||||| ||| ||||||||||||||||||    
T  28804221 cgccggtcacgatattaaattttgggtcgtgacaa 28804255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 26525364 - 26525503
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| |||||| ||||||| ||||||| | || |||||||||||||||||| || |||||||| |||| ||| |||| | | ||||||||||| ||||    
T  26525364 atcattttaagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccg 26525463  T
Q  111 gtcacgaaattgaattttgggtcgtgacaaagttggtatc 150  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  26525464 gtcacgatattgaatttttggtcgtgacaaagttggtatc 26525503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 36263778 - 36263730
Alignment:
Q  69 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    |||||||||||||||| |||  ||| ||||||||||| |||||||||||    
T  36263778 tcaataggcttgccgggctaaaatgttctagttcgtgcgccggtcacga 36263730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 5358221 - 5358102
Alignment:
Q  22 tgaaagtcaa-tttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaat 120  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||  |    
T  5358221 tgaaagtcaaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattt 5358122  T
Q  121 tgaattttgggtcgtgacaa 140  Q
    |  |||||||||||||||||    
T  5358121 tagattttgggtcgtgacaa 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 30874010 - 30873893
Alignment:
Q  19 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 118  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||| |||||||||||     
T  30874010 aagtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgat 30873911  T
Q  119 attgaattttgggtcgtg 136  Q
     |||||||||||| ||||    
T  30873910 tttgaattttgggccgtg 30873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
Q  33 ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt 132  Q
    |||||||||||||||||||||||| | |||| || |||||||||||||||| ||||||||| ||||||||||| |||||||||||   ||||||||||||    
T  27560733 ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt 27560635  T
Q  133 cgtgaca 139  Q
    | |||||    
T  27560634 cctgaca 27560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 51534234 - 51534327
Alignment:
Q  45 taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||||||| |||||| || |||||||||||||||||||||| ||| ||||||||||| |||||||||||   |||||||||||||||||||    
T  51534234 taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 51534327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 18693823 - 18693730
Alignment:
Q  45 taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca 139  Q
    |||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||| |||||||||||   |||||||||||||||||||    
T  18693823 taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 18693730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 28602747 - 28602613
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||  || ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| ||||||    
T  28602747 tggatatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtg 28602648  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
     |||||||||||   ||||||||||||||||||||    
T  28602647 cgccggtcacgattgtgaattttgggtcgtgacaa 28602613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 15925502 - 15925635
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||| |  |||||||||||||||||||||||||| || ||||| |   |||||||||||| ||||||||||||||||| || |||    
T  15925502 tggatatcattttaagtgagaaacaatttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtg 15925601  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgaca 139  Q
     ||||||||||| ||| |||||||||||||||||    
T  15925602 cgccggtcacgatattaaattttgggtcgtgaca 15925635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 4706284 - 4706151
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||| ||||  || |||| |||||||||||||||||||||||| ||| || |||||  ||||||||||||||||||| ||||||| |||    
T  4706284 tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtg 4706185  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgaca 139  Q
     |||||||||||   |||||||||||||||||||    
T  4706184 cgccggtcacgattgtgaattttgggtcgtgaca 4706151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 18983071 - 18983119
Alignment:
Q  69 tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    |||||||||||||||  |||| ||| ||||||||||| |||||||||||    
T  18983071 tcaataggcttgccgagctagaatgttctagttcgtgcgccggtcacga 18983119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 1277 - 1388
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||    
T  1277 tggatatcattttaagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtg 1376  T
Q  106 tgccggtcacga 117  Q
     |||||||||||    
T  1377 cgccggtcacga 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 10306 - 10403
Alignment:
Q  47 aattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacaaagtt 144  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  10306 aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgacaaagtt 10403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 406586 - 406455
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||  | ||||||||| ||  | ||| |||||| |||||||||||    
T  406586 tggatatcattttaagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtg 406487  T
Q  106 tgccggtcacgaaattgaattttgggtcgtga 137  Q
     |||| ||||||  ||||||||||||||||||    
T  406486 cgccgatcacgattttgaattttgggtcgtga 406455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 423957 - 423827
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||  | ||||||||  ||  |||||||| ||| | ||||| |||    
T  423957 tggatatcattttaagtgaaaatcaatttaaaaattgtttaaa-tatagtttgtcaagtttcgtcaatagatttttcggactagaatgttttagtttgtg 423859  T
Q  106 tgccggtcacgaaattgaattttgggtcgtga 137  Q
      ||| |||| |   |||||||||||||||||    
T  423858 caccgatcacaattgtgaattttgggtcgtga 423827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 412579 - 412530
Alignment:
Q  13 cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaa 62  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  412579 cattttaagtgaaagtcaatttaaaaattatttaaattatagtttctcaa 412530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 115391 - 115262
Alignment:
Q  11 atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccg 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||| |||||| || ||||||  ||||||||||| ||||    
T  115391 atcattttaagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccg 115292  T
Q  111 gtcacgaaattgaattttgggtcgtgacaa 140  Q
     ||| ||   ||||||||||||||||||||    
T  115291 atcatgattgtgaattttgggtcgtgacaa 115262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 233174 - 233054
Alignment:
Q  19 aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaa 118  Q
    ||||||||||||| ||| |||| || | |||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||     
T  233174 aagtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgat 233075  T
Q  119 attgaattttgggtcgtgaca 139  Q
      |||||||||||||||||||    
T  233074 tgtgaattttgggtcgtgaca 233054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 4091 - 3957
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtg 105  Q
    |||| |||||| | ||||||| ||||||| |||||||||||||||||||| || |||| || || ||||| |||||| |||||||||| |||||||||||    
T  4091 tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtg 3992  T
Q  106 tgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
     |||| |||| |   ||||||||||||||||||||    
T  3991 cgccgatcactattgtgaattttgggtcgtgacaa 3957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 5445 - 5309
Alignment:
Q  6 tggacatcattataagtgaaagtcaatttgaaaattgtttaaattata--gtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcg 103  Q
    |||| |||||| | ||||||| ||||||| ||||||||||||||||||  || ||||||| || |||||||| |||||| |||||||||| |||||||||    
T  5445 tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcg 5346  T
Q  104 tgtgccggtcacgaaattgaattttgggtcgtgacaa 140  Q
    || |||| |||| |   ||||||||||||||||||||    
T  5345 tgcgccgatcactattgtgaattttgggtcgtgacaa 5309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 4129 - 4229
Alignment:
Q  39 attgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgac 138  Q
    |||||||||||||||||| | |||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||   |||| |||||||||||||    
T  4129 attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac 4226  T
Q  139 aaa 141  Q
    |||    
T  4227 aaa 4229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 61210 - 61256
Alignment:
Q  71 aataggcttgccggactaggatgctctagttcgtgtgccggtcacga 117  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||||||    
T  61210 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacga 61256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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