View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_41 (Length: 372)

Name: NF9061_low_41
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_41
NF9061_low_41
[»] chr6 (6 HSPs)
chr6 (76-326)||(22973000-22973249)
chr6 (76-326)||(23815150-23815399)
chr6 (76-198)||(5238729-5238847)
chr6 (76-159)||(5238571-5238654)
chr6 (232-295)||(5195765-5195828)
chr6 (76-112)||(5196106-5196142)
[»] chr8 (1 HSPs)
chr8 (76-307)||(22969980-22970212)
[»] chr3 (5 HSPs)
chr3 (76-198)||(3382301-3382419)
chr3 (104-159)||(3382169-3382224)
chr3 (231-295)||(3377163-3377227)
chr3 (76-112)||(3377513-3377549)
chr3 (222-281)||(53584215-53584275)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 22973249 - 22973000
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttttgattagagaaatcga 175  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||| ||    
T  22973249 aaaatgggaaaagtcaagtttagagcaattagagcaagtttagattaccggtaaaatt-aaaaaacagaacctaatccaagtttcgattagagcaattga 22973151  T
Q  176 gctttaatggggaaaattgaaggnnnnnnntgggttcacgtttcttgatttgttttctctctctatctcttcgaaccttgtttcagtttcagttttgcaa 275  Q
    |||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  22973150 gctttaatggggaaaattgaaggaaaaaaatgggttcatgtttcttgatttgttttctctctctatctcttcaaaccttgtttcagcttctgttttgcaa 22973051  T
Q  276 aacgcagcgttttgtcttttgcataccacatcgtagacttcacagccacgt 326  Q
    |||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  22973050 aacgcagcgttttgtcttttgcatgccacaccgcagacttcacagctacgt 22973000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 76 - 326
Target Start/End: Original strand, 23815150 - 23815399
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttttgattagagaaatcga 175  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||| ||    
T  23815150 aaaatgggaaaagtcaagtttagagcaattagagcaagtttagattaccggtaaaatt-aaaaaacagaacctaatccaagtttcgattagagcaattga 23815248  T
Q  176 gctttaatggggaaaattgaaggnnnnnnntgggttcacgtttcttgatttgttttctctctctatctcttcgaaccttgtttcagtttcagttttgcaa 275  Q
    |||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  23815249 gctttaatggggaaaattgaaggaaaaaaatgggttcatgtttcttgatttgttttctctctctatctcttcaaaccttgtttcagcttctgttttgcaa 23815348  T
Q  276 aacgcagcgttttgtcttttgcataccacatcgtagacttcacagccacgt 326  Q
    |||||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  23815349 aacgcagcgttttgtcttttgcatgccacaccgcagacttcacagctacgt 23815399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 5238729 - 5238847
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttttgattagagaaatcga 175  Q
    |||||||||||| ||||||||||||||||||||||||||||    |||  ||||||||||||||||||||||| ||||| |||| |||||||| ||| ||    
T  5238729 aaaatggggaaaatcaagtttagagcaattagagcaagttt----taccagtaaaattgaaaaaacagaacctgatccatgtttcgattagagcaattga 5238824  T
Q  176 gctttaatggggaaaattgaagg 198  Q
    |||||||||||||||||||||||    
T  5238825 gctttaatggggaaaattgaagg 5238847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 5238571 - 5238654
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttt 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||| ||||    
T  5238571 aaaatggggaaaatcaagtttagagcaattagagcaagtttcgattaccagtaaaattgaaaaaacagaatctgatccatgttt 5238654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 5195828 - 5195765
Alignment:
Q  232 ctctctctatctcttcgaaccttgtttcagtttcagttttgcaaaacgcagcgttttgtctttt 295  Q
    |||||||||||||||| ||||||||||||  ||| || |||||||||||||||||||| |||||    
T  5195828 ctctctctatctcttcaaaccttgtttcaacttctgtattgcaaaacgcagcgttttgcctttt 5195765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 5196142 - 5196106
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaa 112  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5196142 aaaatggggaaaatcaagtttagagcaattagagcaa 5196106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 76 - 307
Target Start/End: Original strand, 22969980 - 22970212
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttttgattagagaaatcga 175  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||| ||| ||    
T  22969980 aaaatggggaaaatcaagtttagagcaattagagcaaatttcgattactcgtaaaattgaaaaaacagaacctaatccaagtttcaattagagcaattga 22970079  T
Q  176 gctttaatggggaaaattgaagg-nnnnnnntgggttcacgtttcttgatttgttttctctctctatctcttcgaaccttgtttcagtttcagttttgca 274  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  22970080 gctttaatggggaaaattgaaggaaacaaaatgggttcacgtttcttgatttgttttctctctctatctcttcaaaccttgtttcagcttctgttttgca 22970179  T
Q  275 aaacgcagcgttttgtcttttgcataccacatc 307  Q
    ||||||| ||||||| ||||||||| |||||||    
T  22970180 aaacgcaacgttttgccttttgcatgccacatc 22970212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 3382301 - 3382419
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttttgattagagaaatcga 175  Q
    |||||||||||| ||||||||||||||||||||||||||||    |||  ||||||||||||||||||||||| ||||| |||| |||||||| ||| ||    
T  3382301 aaaatggggaaaatcaagtttagagcaattagagcaagttt----taccagtaaaattgaaaaaacagaacctgatccatgtttcgattagagcaattga 3382396  T
Q  176 gctttaatggggaaaattgaagg 198  Q
    |||||||||||||||||||||||    
T  3382397 gctttaatggggaaaattgaagg 3382419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 3382169 - 3382224
Alignment:
Q  104 ttagagcaagtttcgattactggtaaaattgaaaaaacagaacctaatccaagttt 159  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||    
T  3382169 ttagagcaagtttcgattaccagtaaaattgaaaaaacagaacctgatccatgttt 3382224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3377227 - 3377163
Alignment:
Q  231 tctctctctatctcttcgaaccttgtttcagtttcagttttgcaaaacgcagcgttttgtctttt 295  Q
    ||||||||||||||||| |||||||||||   ||| || |||||||||||||||||||| |||||    
T  3377227 tctctctctatctcttcaaaccttgtttctacttctgtattgcaaaacgcagcgttttgcctttt 3377163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 3377549 - 3377513
Alignment:
Q  76 aaaatggggaaagtcaagtttagagcaattagagcaa 112  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3377549 aaaatggggaaaatcaagtttagagcaattagagcaa 3377513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 53584275 - 53584215
Alignment:
Q  222 gatttgttttctctctctatctcttcgaa-ccttgtttcagtttcagttttgcaaaacgca 281  Q
    |||||||||||||||||||||||||| || |||| ||| || |||  ||||||||||||||    
T  53584275 gatttgttttctctctctatctcttcaaacccttcttttagcttctattttgcaaaacgca 53584215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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