View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_44 (Length: 364)
Name: NF9061_low_44
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_44 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 6950951 - 6951307
Alignment:
| Q |
1 |
ttaggcgtgtccgtttcaggtttgtcgaaattgtttgcatggaaaataaattactttttaaagaaacatctgtttcattcaaaattcaaaatttcatttg |
100 |
Q |
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| T |
6950951 |
ttaggcgtgtccgtttcaggtttgtcgaaattgtttgcatggaaaataaattactttttaaagaaacatcagtttcattc-------aaaatttcatttg |
6951043 |
T |
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| Q |
101 |
tatatccttttacgcagccgagagaagtttggagaaatgcatgcgagattgtggtgggaagagaaccgtgcgaggatacaagagcaatatttgtgactat |
200 |
Q |
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| T |
6951044 |
tatatccttttacgcagccgagagaagtttggagaaatgcatgcgagattgtggtgggaagagaaccgtgcgaggatacaagagcaatatttgtgactat |
6951143 |
T |
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| Q |
201 |
agtaatgagcctttacacacataactgcttcagaagactaacaagagaggacaatgtgaaagctttacattactgtgaattttagattcagtttctttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6951144 |
agtaatgagcctttacacacataactgcttcagaagactaacaagagaggacaatgtgaaagctttacattactgtgaattttagattcagtttctttct |
6951243 |
T |
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| Q |
301 |
ttcttttcagtggataatattcaagtgactacaactttcaagtttggagttcagtgtagctgtg |
364 |
Q |
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| T |
6951244 |
ttcttttcagtggataatattcaagtgactacaactttcaagtttggagttcagtgtagctgtg |
6951307 |
T |
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