View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_46 (Length: 361)

Name: NF9061_low_46
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_46
NF9061_low_46
[»] chr1 (10 HSPs)
chr1 (11-204)||(17516734-17516926)
chr1 (253-332)||(17516956-17517035)
chr1 (250-332)||(15774290-15774371)
chr1 (250-332)||(11405492-11405573)
chr1 (250-332)||(3532952-3533032)
chr1 (326-361)||(17517096-17517131)
chr1 (281-332)||(34560345-34560396)
chr1 (251-332)||(4616909-4616989)
chr1 (250-319)||(32635190-32635258)
chr1 (251-319)||(4354084-4354150)
[»] chr2 (7 HSPs)
chr2 (253-332)||(11837025-11837103)
chr2 (250-319)||(580761-580828)
chr2 (250-332)||(3179360-3179441)
chr2 (252-332)||(8234772-8234851)
chr2 (264-332)||(23405235-23405304)
chr2 (250-319)||(34018048-34018115)
chr2 (281-332)||(2114442-2114494)
[»] chr4 (14 HSPs)
chr4 (250-332)||(33076566-33076648)
chr4 (250-332)||(8690250-8690331)
chr4 (250-332)||(20753103-20753184)
chr4 (281-332)||(28221314-28221365)
chr4 (255-332)||(32885724-32885800)
chr4 (250-319)||(53815746-53815813)
chr4 (250-319)||(9693012-9693079)
chr4 (250-319)||(14149843-14149910)
chr4 (250-319)||(28520709-28520776)
chr4 (268-317)||(31587489-31587538)
chr4 (250-319)||(48968188-48968255)
chr4 (253-332)||(26708534-26708610)
chr4 (261-332)||(35451110-35451180)
chr4 (262-332)||(54264964-54265035)
[»] chr8 (8 HSPs)
chr8 (253-332)||(44070349-44070427)
chr8 (250-332)||(13702330-13702411)
chr8 (250-317)||(24074558-24074623)
chr8 (250-319)||(1588817-1588884)
chr8 (250-332)||(25689366-25689447)
chr8 (250-332)||(7649565-7649645)
chr8 (250-319)||(2800069-2800136)
chr8 (250-319)||(33570407-33570474)
[»] chr6 (5 HSPs)
chr6 (256-332)||(20568239-20568316)
chr6 (251-332)||(29284154-29284234)
chr6 (250-319)||(25020506-25020573)
chr6 (250-318)||(5134412-5134478)
chr6 (300-332)||(6144001-6144033)
[»] chr5 (2 HSPs)
chr5 (251-332)||(38230184-38230263)
chr5 (250-332)||(843346-843427)
[»] chr3 (14 HSPs)
chr3 (250-319)||(50724417-50724484)
chr3 (250-319)||(50788364-50788431)
chr3 (253-317)||(48173338-48173400)
chr3 (250-332)||(13616053-13616133)
chr3 (250-317)||(14417920-14417985)
chr3 (250-332)||(43566774-43566855)
chr3 (250-332)||(38555006-38555086)
chr3 (250-315)||(24136728-24136793)
chr3 (250-319)||(27183659-27183726)
chr3 (250-319)||(33206807-33206874)
chr3 (250-319)||(36727441-36727508)
chr3 (250-319)||(46328902-46328969)
chr3 (250-319)||(52030171-52030238)
chr3 (261-332)||(53467985-53468054)
[»] chr7 (9 HSPs)
chr7 (250-332)||(16916493-16916576)
chr7 (250-332)||(21882170-21882254)
chr7 (250-332)||(24396981-24397062)
chr7 (250-319)||(47635100-47635166)
chr7 (250-296)||(22047593-22047637)
chr7 (250-307)||(3948116-3948173)
chr7 (250-319)||(22797953-22798022)
chr7 (250-319)||(47552263-47552330)
chr7 (250-318)||(34948157-34948223)
[»] scaffold0027 (1 HSPs)
scaffold0027 (281-332)||(38630-38682)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 17516734 - 17516926
Alignment:
Q  11 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516734 attatactaactactaatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggct 17516833  T
Q  111 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaacttcaagatgaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17516834 ttctgaattctgcataccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaactt-aagatgaa 17516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 17516956 - 17517035
Alignment:
Q  253 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||  |||||| |||||||||| |||| ||||||||||    
T  17516956 aggtagtttagtggctagaaatttatctttataagatgaataagcggggtgtctgaggttcgaatccgaaccctacatat 17517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 15774290 - 15774371
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||| ||||||||||||||||    
T  15774290 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctacatat 15774371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 11405573 - 11405492
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||| |||||||||| |||||    
T  11405573 gtcaggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatat 11405492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 3532952 - 3533032
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    |||||||||| |||| ||||||| |||| ||| ||||||||||||||   |||||||| |||| |||||||||||||||||||    
T  3532952 gtcaggtagcctagtagctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttggaacccgacccctacatat 3533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 17517096 - 17517131
Alignment:
Q  326 tacatattaatcatgcacaaagtcaaaaagacaaga 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  17517096 tacataataatcatgcacaaagtcaaaaagacaaga 17517131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 34560345 - 34560396
Alignment:
Q  281 ttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    ||||||||||||||||   ||||||||||||||||||| ||||| |||||||    
T  34560345 ttataaggtgaataagtggggtgtccgaggttcgaacctgacccatacatat 34560396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 4616989 - 4616909
Alignment:
Q  251 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc-cgacccctacatat 332  Q
    ||||||||  |||||||||||| |||| ||||||||||||||||||   |||||| | |||||||||| ||||||||||||||    
T  4616989 tcaggtagtctagtggctagaa-ttca-ctttataaggtgaataagtggggtgtctgtggttcgaaccgcgacccctacatat 4616909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 32635258 - 32635190
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||| ||||| ||||||||||||||||| || | |||||||||||||   |||||||| |||||||||||    
T  32635258 gtcaagtagcctagtggctagaaattcacctct-taaggtgaataagtggggtgtccggggttcgaaccc 32635190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 4354084 - 4354150
Alignment:
Q  251 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||||   ||||||||| ||||||||||    
T  4354084 tcaggtagcctggtggctagaa-ttca-ctttataaggtgaataagtggggtgtccgaagttcgaaccc 4354150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 11837103 - 11837025
Alignment:
Q  253 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||    
T  11837103 aggtagcctagtggctagaa-ttca-ctttataaggtgaataagtgaggtgtccggggttcgaaccccgacccctacatat 11837025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 580761 - 580828
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||   |||||||| |||||||||||    
T  580761 gtcaggtagcctagtggctagaa-ttcatctt-ataaggtgaataagtggggtgtccggggttcgaaccc 580828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 3179441 - 3179360
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc-cgacccctacatat 332  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| |||||||||||| |||||||| |||||    
T  3179441 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacctcgacccctgcatat 3179360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 8234772 - 8234851
Alignment:
Q  252 caggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||| |||| |||||||||||    
T  8234772 caggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccccggcccctacatat 8234851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 23405304 - 23405235
Alignment:
Q  264 tggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||||||| |||| |||||||||||||   |||||||  |||||||| |||||||||| |||||    
T  23405304 tggctagaaattcacctttttaaggtgaataagtggggtgtccagggttcgaaccccgacccctgcatat 23405235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 34018048 - 34018115
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||| ||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  34018048 gtcaggtagcctagtggttagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 34018115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 2114442 - 2114494
Alignment:
Q  281 ttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||||||||   ||||||||| |||||||| ||||||||||||||||    
T  2114442 ttataaggtgaataaatgaggtgtccggggttcgaaccccgacccctacatat 2114494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 33076648 - 33076566
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||| | |||||||| |||||||| |||||||||| |||||    
T  33076648 gtcaggtagcatagtggctataa-ttcatctttttaaggtgaataagtagggtgtccggggttcgaaccccgacccctgcatat 33076566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 8690331 - 8690250
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||| |||||||||| |||||    
T  8690331 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatat 8690250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 20753103 - 20753184
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||| |||| |||||||||||    
T  20753103 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgtggtgtccggggttcgaaccccggcccctacatat 20753184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 28221314 - 28221365
Alignment:
Q  281 ttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    ||||||||||||||||   |||||||| ||||||||||||||||| ||||||    
T  28221314 ttataaggtgaataagtggggtgtccggggttcgaacccgacccccacatat 28221365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 32885800 - 32885724
Alignment:
Q  255 gtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac-ccgacccctacatat 332  Q
    |||||||||||| ||||| |||| ||| ||||||||||||||   |||||||||||||||||| ||||||||| |||||    
T  32885800 gtagcttagtggatagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaactccgacccctgcatat 32885724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 53815813 - 53815746
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||||||||  ||||||  |||||||||   |||||||| |||||||||||    
T  53815813 gtcaggtagcctagtggctagaaattcacttttata--gtgaataagtggggtgtccggggttcgaaccc 53815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 9693079 - 9693012
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  9693079 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 9693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 14149910 - 14149843
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  14149910 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 14149843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 28520709 - 28520776
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  28520709 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 28520776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 31587538 - 31587489
Alignment:
Q  268 tagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 317  Q
    ||||||||||||||||||||||||||||| ||| ||| |||  |||||||    
T  31587538 tagaaattcatctttataaggtgaataagtaagatgttcgaaattcgaac 31587489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 48968188 - 48968255
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  48968188 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 48968255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 26708534 - 26708610
Alignment:
Q  253 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    ||||||| ||||||||||||||||| ||||| |  ||||||| |  ||||||| ||||||||||||| |||||| |||||    
T  26708534 aggtagcctagtggctagaaattca-ctttaaa--gtgaataggtgaggtgtctgaggttcgaacccaacccctgcatat 26708610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 35451110 - 35451180
Alignment:
Q  261 tagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac-ccgacccctacatat 332  Q
    |||||||||||| |||||||| ||||||||||||||  |||||||||  |||||||| ||||||||| |||||    
T  35451110 tagtggctagaa-ttcatctt-ataaggtgaataagtgaggtgtccgtagttcgaactccgacccctgcatat 35451180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 54265035 - 54264964
Alignment:
Q  262 agtggctagaaattcatctttat-aaggtgaataagcaaggtgtccgaggttcgaaccc-gacccctacatat 332  Q
    ||||||||||| ||||||||| | ||||||||||||  |||||| ||||||| |||||| |||||||||||||    
T  54265035 agtggctagaa-ttcatctttttcaaggtgaataagtgaggtgttcgaggtttgaaccctgacccctacatat 54264964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 44070349 - 44070427
Alignment:
Q  253 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc-cgacccctacatat 332  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||||||| || |||||||||||    
T  44070349 aggtagtttagtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccgaggttcgaaccgcggcccctacatat 44070427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 13702330 - 13702411
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||||||||  ||||||| |||||||||| |||||||||| |||||    
T  13702330 gtcagctagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtctgaggttcgaaccccgacccctgcatat 13702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 24074623 - 24074558
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 317  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||  |||||||||||||||||||    
T  24074623 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccgaggttcgaac 24074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 1588884 - 1588817
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   ||||||||||||||||||||    
T  1588884 gtcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtggggtgtccgaggttcgaaccc 1588817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 25689366 - 25689447
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc-cgacccctacatat 332  Q
    |||||||||| |||||| ||||| |||| ||||||||||||| |||| | |||||||| |||||||||| || |||||||||||    
T  25689366 gtcaggtagcctagtggttagaa-ttca-ctttataaggtgattaagtagggtgtccggggttcgaacctcggcccctacatat 25689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 7649645 - 7649565
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    |||||||||| |||||||||||| |||| |||  |||||||||||||   ||||| |||||||||||||| | ||||||||||    
T  7649645 gtcaggtagcctagtggctagaa-ttcaccttg-taaggtgaataagtggggtgttcgaggttcgaaccccagccctacatat 7649565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 2800136 - 2800069
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  2800136 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 2800069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 33570407 - 33570474
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||| |||| ||||||||||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  33570407 gtcaagtagtttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 33570474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 20568239 - 20568316
Alignment:
Q  256 tagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||| ||||| ||||||||||| ||||||||||||||||||   ||||| || |||||||| |||||||||| |||||    
T  20568239 tagcgtagtgactagaaattcacctttataaggtgaataagtggggtgttcggggttcgaaccccgacccctgcatat 20568316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 29284234 - 29284154
Alignment:
Q  251 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||| ||||| ||||||||||    
T  29284234 tcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccccgatccctacatat 29284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 25020506 - 25020573
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  25020506 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 25020573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 5134412 - 5134478
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| ||||||||||||    
T  5134412 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacc 5134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 6144033 - 6144001
Alignment:
Q  300 ggtgtccgaggttcgaacccgacccctacatat 332  Q
    |||||||| ||||||||||||||||||||||||    
T  6144033 ggtgtccggggttcgaacccgacccctacatat 6144001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 38230184 - 38230263
Alignment:
Q  251 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||  ||||||||| | ||| |||||||||||| |||||    
T  38230184 tcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtgaggtgtccgggattcaaacccgacccctgcatat 38230263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 843346 - 843427
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||| |||||||||||| ||||  |||||||||||||||||   |||||||| |||||||| |||| |||||||||||    
T  843346 gtcaggtagcctagtggctagaa-ttcaa-tttataaggtgaataagtggggtgtccggggttcgaaccccgtcccctacatat 843427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 50724484 - 50724417
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   ||||||||||||||||||||    
T  50724484 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccc 50724417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 50788364 - 50788431
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   ||||||||||||||||||||    
T  50788364 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccc 50788431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 48173400 - 48173338
Alignment:
Q  253 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 317  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||  ||||||||| |||||||||    
T  48173400 aggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccggggttcgaac 48173338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 13616053 - 13616133
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac-ccgacccctacatat 332  Q
    ||||||||||| ||||||||||| |||| ||| ||||| ||||||||   |||||||||||||||||| |||||||||||||||    
T  13616053 gtcaggtagct-agtggctagaa-ttcacctt-ataagatgaataagtggggtgtccgaggttcgaactccgacccctacatat 13616133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 14417985 - 14417920
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 317  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||||    
T  14417985 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaac 14417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 43566774 - 43566855
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgacccctacatat 332  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| |||||||||| |||||||||| |||||    
T  43566774 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaaccccgacccctgcatat 43566855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 38555006 - 38555086
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    |||||||||  | ||||||||||||||| |||| ||| |||||||||  ||||||  |||||||||||||||||||| |||||    
T  38555006 gtcaggtagtctggtggctagaaattca-cttt-taaagtgaataagtgaggtgtttgaggttcgaacccgacccctgcatat 38555086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 24136728 - 24136793
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcga 315  Q
    |||| ||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||    
T  24136728 gtcaagtagcctagtggctagaaattcacctttttaaagtgaataagtggggtgtccggggttcga 24136793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 27183659 - 27183726
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  27183659 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 27183726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 33206874 - 33206807
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  33206874 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 33206807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 36727441 - 36727508
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||| |||||||||||||| |||| ||| ||||| ||||||||   ||||||||||||||||||||    
T  36727441 gtcaggtaacttagtggctagaa-ttcacctt-ataagatgaataagtggggtgtccgaggttcgaaccc 36727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 46328902 - 46328969
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  46328902 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 46328969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 52030238 - 52030171
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| ||||||||| ||||||| |||| ||| ||||||||| | |||||||| |||||||||||    
T  52030238 gtcaggtagcctagtggctaaaaattca-cttt-taaagtgaataagtagggtgtccggggttcgaaccc 52030171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 53468054 - 53467985
Alignment:
Q  261 tagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgacccctacatat 332  Q
    ||||||||||||||   || ||||||||||||||||   ||||||||||||||||||||  ||||| |||||    
T  53468054 tagtggctagaaatc--tccttataaggtgaataagtggggtgtccgaggttcgaaccccgcccctgcatat 53467985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 16916576 - 16916493
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttat-aaggtgaataagcaaggtgtccgaggttcgaaccc-gacccctacatat 332  Q
    |||| ||||||||||||||| ||||| |||||| | ||| ||||||||  |||||||||| |||||||||| |||||||||||||    
T  16916576 gtcaagtagcttagtggcta-aaatttatcttttttaagctgaataagtgaggtgtccgaagttcgaaccccgacccctacatat 16916493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 21882170 - 21882254
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatcttt-ataaggtgaataagcaaggtgtccgaggttcgaaccc-gacccctacatat 332  Q
    |||| ||||| |||| |||||||||||| |||| ||||||||||||||| ||||||||| | ||| ||||| ||||||| |||||    
T  21882170 gtcaagtagcctagtagctagaaattcacctttcataaggtgaataagcgaggtgtccgggcttcaaacccggacccctgcatat 21882254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 24397062 - 24396981
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac-ccgacccctacatat 332  Q
    |||||||||| ||||||||||||||||| |||| ||| ||||||||| | |||||||  ||||||||| ||||||||| |||||    
T  24397062 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtagggtgtccagggttcgaactccgacccctgcatat 24396981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 47635166 - 47635100
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| |||||||||||||||||   || ||| ||||||||   |||||||||||||||||||||    
T  47635166 gtcaggtagcctagtggctagaaattca---ttttaaagtgaataaatgaggtgtccgaggttcgaaccc 47635100  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 22047637 - 22047593
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataag 296  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22047637 gtcaggtagcttagtggctag-aattcatc-ttataaggtgaataag 22047593  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 3948173 - 3948116
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccg 307  Q
    |||| |||| ||||||||||||||||||  |||||||| ||||||||  |||||||||    
T  3948173 gtcaagtagtttagtggctagaaattcacatttataagatgaataagtgaggtgtccg 3948116  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 22798022 - 22797953
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||| ||||| ||||||||||||||||  |||| || ||||||||||  ||| ||||| |||||||||||    
T  22798022 gtcaagtagcctagtggctagaaattcccctttttatggtgaataagtgaggagtccggggttcgaaccc 22797953  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 47552330 - 47552263
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 319  Q
    |||||||||| | |||||||||| |||| ||| |||||||||||||| | |||||||| |||||||||||    
T  47552330 gtcaggtagcctggtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccggggttcgaaccc 47552263  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 34948223 - 34948157
Alignment:
Q  250 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 318  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| ||||||||||    
T  34948223 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaacc 34948157  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 38630 - 38682
Alignment:
Q  281 ttataaggtgaataagcaaggtgtccgaggttcg-aacccgacccctacatat 332  Q
    |||||||||||||||| | |||||||||| |||| ||| ||||||||||||||    
T  38630 ttataaggtgaataagaagggtgtccgagattcgaaactcgacccctacatat 38682  T

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