View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_47 (Length: 360)
Name: NF9061_low_47
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2306358 - 2306702
Alignment:
| Q |
1 |
ggccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttggttgaaaaagttgatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2306358 |
ggccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttggttgaaaaacttgatgat |
2306457 |
T |
|
| Q |
101 |
caaggtaatcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattgg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2306458 |
caaggtaatcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataatcaaagccacgatattgg |
2306557 |
T |
|
| Q |
201 |
tatgtatattttaattgtgacctcgctatatttgatagaagtggtaaatagattagataatttataactaaaaatttatagcaaaacttagttataatat |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2306558 |
tatgtatattttacttgtgacctcgctatatttgataaaagtggtaaatagattagataatttataactaaaaatttatagcaaaacttagttataatat |
2306657 |
T |
|
| Q |
301 |
actttcaagggtgcttgcttagagatttaaaaggagagttcaatg |
345 |
Q |
| |
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| T |
2306658 |
attttcaagggtgcttgcttagagatttaaaaggagagttcaatg |
2306702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 2338681 - 2338882
Alignment:
| Q |
3 |
ccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttggttgaaaaagttgatgatca |
102 |
Q |
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| T |
2338681 |
ccatgaaagaaacttccaaggagttggacaagatttttgatgagtggttgaaggagcgtcgccataaaaggact---ttggttgaaaaccttgatgatca |
2338777 |
T |
|
| Q |
103 |
aggtaatcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggta |
202 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
2338778 |
aggtaatcaagacatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgacggtgataccataatcaaagccacactattggta |
2338877 |
T |
|
| Q |
203 |
tgtat |
207 |
Q |
| |
|
||||| |
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| T |
2338878 |
tgtat |
2338882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 2349764 - 2349922
Alignment:
| Q |
43 |
tgagtggttgaaagagcatcgccatgaaaggactaatttggttgaaaaagttgatgatcaaggtaatcaagatatcatggatgtgttactttcattgctt |
142 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||| |||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
2349764 |
tgagtggttgaaggagcatcgccataaaaggact---ttgactgaaaaggctgatgatcaag---atcaagacatcatggatgtgttaatttcattgctt |
2349857 |
T |
|
| Q |
143 |
gatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgtat |
207 |
Q |
| |
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||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2349858 |
gatggaaaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat |
2349922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
| Q |
108 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgta |
206 |
Q |
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|
||||||| ||||||||||| | ||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
2366767 |
atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta |
2366865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 2338927 - 2339006
Alignment:
| Q |
210 |
tttaattgtgacctcgctatatttgatagaagtggtaaatagattagataatttataactaaaaatttatagcaaaactt |
289 |
Q |
| |
|
|||| |||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||| || | ||||||| |
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| T |
2338927 |
tttacttgtgatctcgctatatttgataaaaatagtaaataaattagataatttataactaaaaattgatcgtaaaactt |
2339006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 2356462 - 2356563
Alignment:
| Q |
108 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaaggg-tttgatggtgataccataatcaaagccacaatattggtatgta |
206 |
Q |
| |
|
|||||||| ||||||| | || |||||| || ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||| || |||||||||| |
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| T |
2356462 |
atcaagatttcatggacgcattgctttcactgtttgatggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatgttggtatgta |
2356561 |
T |
|
| Q |
207 |
ta |
208 |
Q |
| |
|
|| |
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|
| T |
2356562 |
ta |
2356563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
| Q |
108 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgt |
205 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||| |||| | |||||||||| |||| |||||| | ||||||||| ||||||||||||||| |
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| T |
2362157 |
atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt |
2362254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 5805514 - 5805413
Alignment:
| Q |
108 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgtat |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
5805514 |
atcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgataccatgatcaaagccacaatattggtatgtat |
5805415 |
T |
|
| Q |
208 |
at |
209 |
Q |
| |
|
|| |
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|
| T |
5805414 |
at |
5805413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
| Q |
108 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgt |
205 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
4303928 |
atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt |
4304025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 41342076 - 41342169
Alignment:
| Q |
117 |
tcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtga---taccataatcaaagccacaatattggtatgtat |
207 |
Q |
| |
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||||||||||| | |||||||||||| |||||||||| |||||| | |||||| ||| |||||| |||||||||||||||||||||||||| |
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|
| T |
41342076 |
tcatggatgtgatgctttcattgcttaatggaacaacaattgaaagatttgattctgatactaccatcatcaaagccacaatattggtatgtat |
41342169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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