View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9061_low_5 (Length: 646)
Name: NF9061_low_5
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 200 - 630
Target Start/End: Complemental strand, 10290155 - 10289724
Alignment:
| Q |
200 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
10290056 |
T |
|
| Q |
300 |
acactgaggtacctcctagtcctgcatatgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatc |
399 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10290055 |
acaccgaggtacctcctagtcctgcatatgtgtgcagcagtgttcatgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcctgatc |
10289956 |
T |
|
| Q |
400 |
tgtcagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaa |
499 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289955 |
tgtcagcaagaaacaatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaa |
10289856 |
T |
|
| Q |
500 |
tgataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatt-ttttcaatg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10289855 |
tgataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatttttttcaatg |
10289756 |
T |
|
| Q |
599 |
cagtgtgaatattttttcgaactctttctgat |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10289755 |
cagtgtgaatattttttcgaactctttctgat |
10289724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 212 - 596
Target Start/End: Original strand, 9747370 - 9747748
Alignment:
| Q |
212 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactgaggtac |
311 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9747370 |
ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaactacactgaggtac |
9747466 |
T |
|
| Q |
312 |
ctcctagtcctgcatatgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatctgtcagcaagaa |
411 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
9747467 |
ctcctagtcctgcatctgtgtgcagcagtgtccatgaagacttttggaggcgaaccgaatatttaagtccaatatc-aactcctgatttgtcctcaagag |
9747565 |
T |
|
| Q |
412 |
acgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagt |
511 |
Q |
| |
|
| ||||||| |||||||| |||||||| ||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9747566 |
atgatactgctgtgccac-aagttttccgagacatcagctctggtctaaatggtacgatagaattcttaagtttcaagcattgagcaatgataccatagt |
9747664 |
T |
|
| Q |
512 |
tttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatattttttcaa |
596 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||||| |
|
|
| T |
9747665 |
tttgatttaag-aaaagccggttaatgttgttttattatgttcttacttcatgtgcaattttatcgacaaataatcttttttcaa |
9747748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 10290389 - 10290210
Alignment:
| Q |
14 |
atcaatggtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10290389 |
atcaatggtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatgctccaacagttcttatgaacgacggtggtgagaga |
10290290 |
T |
|
| Q |
114 |
catgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290289 |
catgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
10290210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 203 - 628
Target Start/End: Complemental strand, 10298270 - 10297883
Alignment:
| Q |
203 |
tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
302 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||| ||| | |||||||||| |||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
10298270 |
tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaactaca |
10298174 |
T |
|
| Q |
303 |
ctgaggtacctcctagtcctgcatatgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatctgt |
402 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||| || ||| |
|
|
| T |
10298173 |
ctgaggtacctcctagtccagc--atgtgtgcagcagtgttcatgaagacttctggaggcgaatcgaatgtttaaatcca--------------atttgt |
10298090 |
T |
|
| Q |
403 |
cagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatga |
502 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
10298089 |
catcaagagacgatactgttgtgccac-aagttttcagagacatcagctctggtttaaatggtacaataaaattcttaagt--------------attca |
10298005 |
T |
|
| Q |
503 |
taccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataat-attttttcaatgcag |
601 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||| | |||||||||| | |||||| |||||||||||| |
|
|
| T |
10298004 |
taccatagttttgatacaa-aaaaaggcggttaatgttgttttattatgcttttacttcccgtgcaattatattggtgaataatctttttttcaatgc-- |
10297908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 10298782 - 10298669
Alignment:
| Q |
14 |
atcaatggtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298782 |
atcaatggtagaatcacatggcactgaata-------ccgtccgacaatgagagacatcaaaatggtccaacagttcttatgaacgacggtggtgagaga |
10298690 |
T |
|
| Q |
114 |
catgtaagtgcatcatactcc |
134 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10298689 |
catgtaagtgcatcatactcc |
10298669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 9746998 - 9747171
Alignment:
| Q |
14 |
atcaatggtagaatcacatggcactgaatagtgaataccgtccgacaatgagagacatcaaaa-tggtccaacagttcttatgaacgacggtggtgagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||| || |||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
9746998 |
atcaatggtagaatcacatggcactgaata-------ccgcccgacaatgagagatatcacaagtggtccaacagtccttgtgaacgacggtggtgagag |
9747090 |
T |
|
| Q |
113 |
acatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
193 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||||||| || || ||||||| ||||||||||||||| ||||| |
|
|
| T |
9747091 |
acatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaagaattcgttcatacttatt |
9747171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
135 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
193 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 212 - 524
Target Start/End: Complemental strand, 34694519 - 34694209
Alignment:
| Q |
212 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactgaggtac |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34694519 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactgaggtac |
34694421 |
T |
|
| Q |
312 |
ctcctagtcctgcata----tgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatctgtcagca |
407 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||| |||||| ||| |||| | |
|
|
| T |
34694420 |
ctcctagtactgcatgcatctgtatgcagcagtgttcatgaagacttttggaggccaactgaatatttaattccaatatc-aactcctgatttgtc--ct |
34694324 |
T |
|
| Q |
408 |
agaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgatacca |
507 |
Q |
| |
|
|| | ||||||| |||||||||| |||| ||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| | |
|
|
| T |
34694323 |
cgagatgatactgctgtgccacaa--gtttccgagacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatacta |
34694226 |
T |
|
| Q |
508 |
tagttttgattcaagaa |
524 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34694225 |
tagttttgattcaagaa |
34694209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 212 - 524
Target Start/End: Complemental strand, 34716931 - 34716621
Alignment:
| Q |
212 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactgaggtac |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34716931 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactgaggtac |
34716833 |
T |
|
| Q |
312 |
ctcctagtcctgcata----tgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatctgtcagca |
407 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| ||||||||||||||||| || |||||||||| ||||||||| |||||| ||| |||| | |
|
|
| T |
34716832 |
ctcctagtactgcatgcatctgtatgcagcagtgttcatgaagacttttggaggccaactgaatatttaattccaatatc-aactcctgatttgtc--ct |
34716736 |
T |
|
| Q |
408 |
agaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgatacca |
507 |
Q |
| |
|
|| | ||||||| |||||||||| |||| ||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| | |
|
|
| T |
34716735 |
cgagatgatactgctgtgccacaa--gtttccgagacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatacta |
34716638 |
T |
|
| Q |
508 |
tagttttgattcaagaa |
524 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34716637 |
tagttttgattcaagaa |
34716621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 212 - 526
Target Start/End: Original strand, 37743885 - 37744192
Alignment:
| Q |
212 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactacactgaggtac |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37743885 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactacactgaggtac |
37743983 |
T |
|
| Q |
312 |
ctcctagtcctgcatatgtgtgcagcagtgttcttgaagacttttggaggcgaatcgaatatttaagtccaatatcaaactcccgatctgtcagcaagaa |
411 |
Q |
| |
|
|||||||| |||||| ||| ||||||| ||||| ||||||||||| ||||| || |||||||||| || |||||| |||||| ||| ||| | || |
|
|
| T |
37743984 |
ctcctagtactgcatctgtatgcagcaatgttcatgaagacttttagaggccaactgaatatttaattcaaatatc-aactcctgatttgt---cccgag |
37744079 |
T |
|
| Q |
412 |
acgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagt |
511 |
Q |
| |
|
| |||||||||||||||||| |||| ||| |||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
37744080 |
atgatactgttgtgccacaa--gtttccgagaaatcaactctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactttagt |
37744177 |
T |
|
| Q |
512 |
tttgattcaagaaaa |
526 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
37744178 |
tttgatttaagaaaa |
37744192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University