View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_52 (Length: 325)
Name: NF9061_low_52
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 2059807 - 2059623
Alignment:
| Q |
14 |
attatactctacaattataatttcattaatcaagcatattttcttaggnnnnnnnnc--taatcaagcatatttaatttttataaacaaagttgtcttag |
111 |
Q |
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| T |
2059807 |
attatactctacaattataatttcattaatcaagcatattttcttaggaaaaaaaaaattaatcaagcatatttaatttttataaataaagttgtcttaa |
2059708 |
T |
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| Q |
112 |
ttaatgatttcagtttatgcgatcatagataaaattcaaatctaatacttagacatgtgtcttaagggcctagggcacatgttag |
196 |
Q |
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| T |
2059707 |
ttaatggttttagtttatgcgatcatagagagaattcaaatctaatacttagacatgtgtcttaaggacctagagcacatgttag |
2059623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 2059577 - 2059493
Alignment:
| Q |
246 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagct-----tggtgttcgaaagattgtagaat |
325 |
Q |
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| T |
2059577 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagcttggtttggtgttcgaaagattgtagaat |
2059493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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