View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_54 (Length: 297)
Name: NF9061_low_54
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 33858791 - 33859057
Alignment:
| Q |
12 |
attattctcgccgaacctatacaagatgtactnnnnnnntccccaaagacaacgacacaattaaaaaggaaccgtatatagaaggatttcacacatccca |
111 |
Q |
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|||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
33858791 |
attattctcgccgaacctgtgcaagatgtactcaaaaaatccctgaagacaacgacacaattaaaaaggaatcgtatatagaaggatttcacacacccca |
33858890 |
T |
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| Q |
112 |
cccatattcaaaaccacaaggttaacacccaaaggaaggtgcacatcgcaacctataaagatacacaccaaatagtacccaatcaaaaacatacgtgaca |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858891 |
cccatattcaaaaccagaaggttaacacccaaaggaaggtgcacatcgcaacctataaagatacacaccaaatagtacccaatcaaaaacatacgtgaca |
33858990 |
T |
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| Q |
212 |
gacaaagtcccaaactgtagcaggtatcctgacaaagaagttgtccagcaaaaaccatcccactaac |
278 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33858991 |
gacaaagtcccaaactgtagcaggtatcctaacaaagaagttgtccagcaaaaaccatcccactaac |
33859057 |
T |
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