View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_56 (Length: 289)

Name: NF9061_low_56
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_56
NF9061_low_56
[»] chr4 (5 HSPs)
chr4 (1-273)||(44391371-44391643)
chr4 (1-66)||(9937183-9937248)
chr4 (117-159)||(6553529-6553571)
chr4 (20-70)||(56340727-56340776)
chr4 (119-159)||(35695302-35695342)
[»] chr8 (4 HSPs)
chr8 (117-158)||(357758-357799)
chr8 (117-158)||(23683372-23683413)
chr8 (117-159)||(41528064-41528106)
chr8 (132-164)||(9178157-9178189)
[»] chr3 (2 HSPs)
chr3 (117-158)||(20788690-20788731)
chr3 (20-70)||(39183516-39183565)
[»] chr1 (6 HSPs)
chr1 (117-158)||(21469613-21469654)
chr1 (117-158)||(22538632-22538673)
chr1 (117-158)||(19065545-19065586)
chr1 (117-158)||(19113435-19113476)
chr1 (88-155)||(43670693-43670759)
chr1 (23-99)||(19113192-19113267)
[»] scaffold0029 (1 HSPs)
scaffold0029 (117-157)||(15267-15307)
[»] chr6 (3 HSPs)
chr6 (117-158)||(33350094-33350135)
chr6 (20-99)||(31736763-31736842)
chr6 (117-158)||(21984386-21984427)
[»] scaffold0211 (1 HSPs)
scaffold0211 (117-159)||(19508-19550)
[»] chr2 (3 HSPs)
chr2 (20-70)||(24968404-24968453)
chr2 (117-159)||(31966892-31966934)
chr2 (125-162)||(42192233-42192270)
[»] chr7 (1 HSPs)
chr7 (15-60)||(4505560-4505604)
[»] scaffold0284 (1 HSPs)
scaffold0284 (119-159)||(1894-1934)
[»] chr5 (1 HSPs)
chr5 (107-159)||(39233129-39233181)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 44391371 - 44391643
Alignment:
Q  1 tcatcatattgtacggtacgtcatttaaaatatgtcacatcactattttttagtttaaaaataggagaaattgatcgaaactaagtgattttaaaatgag 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44391371 tcatcatattgtacggtacatcatttaaaatatgtcacatcactgttttttagtttaaaaataggagaaattgaccgaaactaagtgatattaaaatgag 44391470  T
Q  101 gtggaccaattttgtaagtgagtgaaaatatgaggaccaaaactgtaattaagccaaaaatatttaagcgaattttgaaaatggctcatgtcaaaggtaa 200  Q
    ||||| ||| | ||| |||||||||||||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44391471 gtggatcaactctgtgagtgagtgaaaatatgaggatcaaaactgtaattaattcaaaaatatttaaacgaattttgaaaatggctcatatcaaaggtaa 44391570  T
Q  201 aaatatctgaaaatagctcacataagggttatatgaagcatccaaaattataagggtgaaatttatgtttctt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44391571 aaatatctgaaaatagctcacataagggttatatgaagcatccaaaattataagggtgaaatttatgtttctt 44391643  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9937183 - 9937248
Alignment:
Q  1 tcatcatattgtacggtacgtcatttaaaatatgtcacatcactattttttagtttaaaaatagga 66  Q
    ||||||||||||| |   ||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  9937183 tcatcatattgtatgactcgtcatttaaaatatatcacatcactattctttagttcaaaaatagga 9937248  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 6553571 - 6553529
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  6553571 agtgagtgaaaatagaagaaccaaaactgtaattaagccaaaa 6553529  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 56340727 - 56340776
Alignment:
Q  20 gtcatttaaaatatgtcacatcactattttttagtttaaaaataggagaaa 70  Q
    ||||||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  56340727 gtcatttaaaatatgtc-catcactgttttttagtcttaaaataggagaaa 56340776  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 35695342 - 35695302
Alignment:
Q  119 tgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  35695342 tgagtgaaaatacgagggccaaaactgtaattaagtcaaaa 35695302  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 357799 - 357758
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  357799 agtgagtgaaaatatgatgaccaaaactgtaattaagccaaa 357758  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 23683413 - 23683372
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  23683413 agtgagtgaaaatatgatgaccaaaactgtaattaagccaaa 23683372  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 41528064 - 41528106
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  41528064 agtgagtgaaaatagaagaaccaaaactgtaattaagccaaaa 41528106  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 9178157 - 9178189
Alignment:
Q  132 gaggaccaaaactgtaattaagccaaaaatatt 164  Q
    ||||||||||| |||||||||||||||||||||    
T  9178157 gaggaccaaaagtgtaattaagccaaaaatatt 9178189  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 20788731 - 20788690
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  20788731 agtgagtgaaaatatgatgaccaaaactgtaattaagccaaa 20788690  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 39183516 - 39183565
Alignment:
Q  20 gtcatttaaaatatgtcacatcactattttttagtttaaaaataggagaaa 70  Q
    ||||||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  39183516 gtcatttaaaatatgtc-catcactgttttttagtcttaaaataggagaaa 39183565  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 21469613 - 21469654
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  21469613 agtgagtgaaaatatgatgaccaaaactgtaattaagccaaa 21469654  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 22538673 - 22538632
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  22538673 agtgagtgaaaatatgatgaccaaaactgtaattaagccaaa 22538632  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 19065545 - 19065586
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  19065545 agtgagtgaaaatatgatgatcaaaactgtaattaagccaaa 19065586  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 19113435 - 19113476
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  19113435 agtgagtgaaaatatgatgatcaaaactgtaattaagccaaa 19113476  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 43670759 - 43670693
Alignment:
Q  88 attttaaaatgaggtggaccaattttgtaagtgagtgaaaatatgaggaccaaaactgtaattaagcc 155  Q
    |||||||||| ||| |||||||||||| ||  ||||||||||| | |||||||||||| |||||||||    
T  43670759 attttaaaat-aggaggaccaattttgcaaaagagtgaaaatagggggaccaaaactgcaattaagcc 43670693  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 19113267 - 19113192
Alignment:
Q  23 atttaaaatatgtcacatcactattttttagtttaaaaataggagaaattgatcgaaactaagtgattttaaaatga 99  Q
    |||||||||||||| ||||| ||||||||||| | |||||| || |||  |||| ||||| |||||| |||||||||    
T  19113267 atttaaaatatgtc-catcattattttttagtcttaaaataagataaagagatcaaaactgagtgatcttaaaatga 19113192  T

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Target: scaffold0029 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 15267 - 15307
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaa 157  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  15267 agtgagtgaaaatatgatgaccaaaactgtaattaagccaa 15307  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 33350094 - 33350135
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  33350094 agtgagtgcaaatatgatgaccaaaactgtaattaagccaaa 33350135  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 31736842 - 31736763
Alignment:
Q  20 gtcatttaaaatatgtcacatcactattttttagtttaaaaataggagaaattgatcgaaactaagtgattttaaaatga 99  Q
    ||||||||||||||||||||||| |  |||| ||| ||||||||| | |||  |||| ||||| |||| |||||||||||    
T  31736842 gtcatttaaaatatgtcacatcattgcttttgagtctaaaaatagtataaagggatcaaaactgagtgcttttaaaatga 31736763  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 21984427 - 21984386
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaa 158  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  21984427 agtgagtgaaaatatgatgatcaaaactgtaattaacccaaa 21984386  T

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Target: scaffold0211 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 19508 - 19550
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  19508 agtgagtgaaaatagaagaaccaaaactgtaattaagccaaaa 19550  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24968404 - 24968453
Alignment:
Q  20 gtcatttaaaatatgtcacatcactattttttagtttaaaaataggagaaa 70  Q
    ||||||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  24968404 gtcatttaaaatatgtc-catcactgttttttagtcttaaaataggagaaa 24968453  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 31966892 - 31966934
Alignment:
Q  117 agtgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||||||||  || ||||||||||||||||||||||||    
T  31966892 agtgagtgaaaatagaagaaccaaaactgtaattaagccaaaa 31966934  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 42192270 - 42192233
Alignment:
Q  125 aaaatatgaggaccaaaactgtaattaagccaaaaata 162  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  42192270 aaaatgtgaggaccaaaagtgtaattaagccaaaaata 42192233  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 4505560 - 4505604
Alignment:
Q  15 ggtacgtcatttaaaatatgtcacatcactattttttagtttaaaa 60  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||    
T  4505560 ggtaggtcatttaaaacatgtcacatcacta-tttttagtttaaaa 4505604  T

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Target: scaffold0284 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 1894 - 1934
Alignment:
Q  119 tgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||||||  || ||||||||||||||||||||||||    
T  1894 tgagtgaaaatagaagaaccaaaactgtaattaagccaaaa 1934  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 39233129 - 39233181
Alignment:
Q  107 caattttgtaagtgagtgaaaatatgaggaccaaaactgtaattaagccaaaa 159  Q
    ||||||||| ||||| | |||||| || || ||||||||||||||||||||||    
T  39233129 caattttgtgagtgaataaaaataagaagatcaaaactgtaattaagccaaaa 39233181  T

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