View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_6 (Length: 630)
Name: NF9061_low_6
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 72 - 614
Target Start/End: Complemental strand, 48959147 - 48958605
Alignment:
| Q |
72 |
taaagaaggaaagtttgcatatactttcttccaagatacattattgaggttggatcattcttgttcaacatttcttactcaaatgcacacaacaagaggc |
171 |
Q |
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| T |
48959147 |
taaagaaggaaagtttgcagatactttcttccaagatacattattgaggttggatcattcttgttcaacatttcttactcaaatgcacacaacaagaggc |
48959048 |
T |
|
| Q |
172 |
aagccttaagacaggggatgcacacaatccgtctcatctctataattgaactcgacccgtatccatgatgtccctttaatcaaacctaaaccaagttatt |
271 |
Q |
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| T |
48959047 |
aagccttaagacaggggatgcacacaatccgcctcatctctataattgaactcgacccgtatccatgatgtccctttaatcaaacctaaaccaagttatt |
48958948 |
T |
|
| Q |
272 |
aaggtcgtgtctagcattgtttcatgaaagaaattaaaacaaagttgaagtggatcatatttctttgtttgagatatagagttggagatgggtttgggtt |
371 |
Q |
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| T |
48958947 |
aaggtcgtgtctagcattgtttcatgaaagaaattaaaacaaagttgaagtggatcatatttctttgtttgagatataaagttggagatgggtttgggtt |
48958848 |
T |
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| Q |
372 |
aatattcatcttactcaaccgaatcctcatacataatacatgcatgcatattattacattgtccagcttcttttagtaaggttattgagtttaactttcc |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48958847 |
aatattcatcttactcaaccgaatcctcatacataatacatgcatgcatattattacattgtccagcttcttttagtaaagttattgagtttaactttcc |
48958748 |
T |
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| Q |
472 |
tttacttacgtctaaaacatatcctacatgcaaaatcgtgtagttttatatgacatgtctttccttaacattttcaacatatagtttacttatttcagtg |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48958747 |
tttacttacgtctaaaacatatcctacatgcaaaatcgtgtagttttatatgacatgtctttccttaacattttcaacatatagtttactgatttcagtg |
48958648 |
T |
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| Q |
572 |
actttcaatttgagctacatctgtagtatatacctagaatatt |
614 |
Q |
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| T |
48958647 |
actttcaatttgagctacatctgtagtatatacctagaatatt |
48958605 |
T |
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