View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_60 (Length: 267)

Name: NF9061_low_60
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_60
NF9061_low_60
[»] chr5 (3 HSPs)
chr5 (1-251)||(9815719-9815969)
chr5 (1-251)||(26354110-26354360)
chr5 (139-222)||(38434910-38434993)
[»] chr3 (14 HSPs)
chr3 (1-246)||(20015384-20015629)
chr3 (1-251)||(20007455-20007705)
chr3 (1-246)||(26653838-26654083)
chr3 (1-243)||(19812976-19813218)
chr3 (88-246)||(20046810-20046968)
chr3 (133-246)||(19832560-19832673)
chr3 (1-246)||(19839083-19839328)
chr3 (119-246)||(19819250-19819377)
chr3 (1-246)||(19951814-19952059)
chr3 (1-246)||(19956774-19957019)
chr3 (1-246)||(20035786-20036031)
chr3 (1-246)||(26647694-26647939)
chr3 (1-246)||(20033517-20033762)
chr3 (7-208)||(19849724-19849925)
[»] chr4 (1 HSPs)
chr4 (88-245)||(6397051-6397208)
[»] chr7 (3 HSPs)
chr7 (88-246)||(12495261-12495419)
chr7 (88-246)||(12519065-12519223)
chr7 (88-240)||(12579358-12579510)
[»] chr1 (2 HSPs)
chr1 (1-246)||(1717910-1718155)
chr1 (92-207)||(38483710-38483819)
[»] chr8 (2 HSPs)
chr8 (133-246)||(22655631-22655744)
chr8 (10-47)||(22685532-22685569)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 9815969 - 9815719
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9815969 attgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 9815870  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9815869 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 9815770  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagccatga 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9815769 aatacaaattttgatcagatataagcctacaatagtttttccaagccatga 9815719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26354110 - 26354360
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||| | ||||||| ||||||| |||||  |||||||| |||| |||||||||||||    
T  26354110 attgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttctcttccgc 26354209  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    ||||||||||| | |||||||||||||||||||||||  |||||| |||||||||||| ||| |||||||| |||||||||||| ||||||||||||| |    
T  26354210 ttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtggga 26354309  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagccatga 251  Q
    ||||||||| |  |||| |||||||||||||||||||||||||||| ||||    
T  26354310 aatacaaatctgtatcaaatataagcctacaatagtttttccaagcaatga 26354360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 38434910 - 38434993
Alignment:
Q  139 cgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatat 222  Q
    |||||||||||||||| ||| ||| ||  ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||    
T  38434910 cgattgcttccaccaccttgcataacgcttggtaacatctgcctcaaataatcttggtggaaaatacaaatttttatcaaatat 38434993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20015384 - 20015629
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||  |||||||||||||| ||||||||||||||  ||||||| | ||||||||| ||||| ||| |  ||||||||||||| |||||||||||||    
T  20015384 attgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaactttcacttctcttccgc 20015483  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    ||||||||||||| |||||||||    ||||||||||||||||||||||||||||||| ||| |||||||  |||||||||||||| |||||||||||||    
T  20015484 ttcacaatgttcttaacaaaatctctgtgacccaataccgattgcttccaccacattgcataacgtgtggctacatctgcctcaaagagtcttggtggaa 20015583  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    ||||||| |||| ||||||||||||||||||||| | |||||||||    
T  20015584 aatacaagtttttatcagatataagcctacaataatatttccaagc 20015629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 20007455 - 20007705
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||||||||||||| |||||||||| | |||||||||| |  || ||||||||||||||| |   |||||||| ||  |||||||||||||    
T  20007455 attgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttctcttccgc 20007554  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    ||||||| ||||| |||||||||| ||||||||||||||  ||||||||||||| ||| ||||||||||   ||| |||||||||||  |||||||||||    
T  20007555 ttcacaacgttcttaacaaaatcgccatgacccaataccacttgcttccaccactttgcatatcgtgtgcgtacagctgcctcaaaatatcttggtggaa 20007654  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagccatga 251  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||| ||||    
T  20007655 aatacaaatttttatcagatataagcctaaaatagttcttccaagcaatga 20007705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 26654083 - 26653838
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||||||||||||| || || |||   || |||| ||  |  ||| |||||||||| |||    |||||||||||   ||||||||||||     
T  26654083 attgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaactcacacttctcttccgt 26653984  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    ||||||||||||| |||||||||  ||||||||||||||  ||||||||||||| ||| ||| ||  || | |||||||||||||| |  ||||||||||    
T  26653983 ttcacaatgttcttaacaaaatctccatgacccaataccagttgcttccaccactttgcataacgcatgatgacatctgcctcaaacaaccttggtggaa 26653884  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||||||||||| || ||| ||| |||| || ||||||| ||||||    
T  26653883 aatacaaatttttataagaaataggcctgcagtagttttcccaagc 26653838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19813218 - 19812976
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||| ||||||||| | || || || ||| ||||||||||| |||||||||||| | || ||  || ||||||||   |||||| |||||     
T  19813218 attgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaactggaacttcttttccga 19813119  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
      |||||| || | |||||||||| |  | || || ||  |||||||||||||| |   |||  | ||||||||||||||||||||||||||||||||||    
T  19813118 cgcacaatattgttaacaaaatcgtcgcgtcctaaaacaaattgcttccaccacttgacataatgcgtggtaacatctgcctcaaaaagtcttggtggaa 19813019  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttcca 243  Q
    ||||||| |||| ||||||||| ||||| || |||||||||||    
T  19813018 aatacaattttttatcagatatgagcctgcagtagtttttcca 19812976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 20046968 - 20046810
Alignment:
Q  88 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 187  Q
    |||||| ||||| |||||||| |||| ||| |||||  || ||||||| |||||||||||||||||| ||  ||| ||  |||||||||||||||||||     
T  20046968 acttctattccgattcacaattttctcaacgaaatctccacgacccaacaccgattgcttccaccactttacataacgcatggtaacatctgcctcaaac 20046869  T
Q  188 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    | ||||||||||||||||||||||| |||||| ||  |||| || ||||| ||||||||    
T  20046868 aatcttggtggaaaatacaaatttttatcagacatgggcctgcagtagttgttccaagc 20046810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 19832673 - 19832560
Alignment:
Q  133 caataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaa 232  Q
    |||||||  ||||||||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||  |||| ||     
T  19832673 caataccagttgcttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcag 19832574  T
Q  233 tagtttttccaagc 246  Q
    ||||||||||||||    
T  19832573 tagtttttccaagc 19832560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19839328 - 19839083
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||| |||||||||| ||| || ||| ||| ||| |||| ||| ||  ||||||||||||| |||   |||||||||||||  |||||||||||      
T  19839328 attgggagaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccaa 19839229  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
      |||||| ||||   |||||||| | |||   ||||| |||||  |||||||| ||| ||| ||| ||||||||||||||||||| | |||||||||||    
T  19839228 cgcacaatattcttctcaaaatcgtcgtgaggaaatactgattgtatccaccaccttgcataacgtatggtaacatctgcctcaaataatcttggtggaa 19839129  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    ||||||| |||| |||| ||||  | || |||||||||||||||||    
T  19839128 aatacaagtttttatcatatatgggtctgcaatagtttttccaagc 19839083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 19819377 - 19819250
Alignment:
Q  119 aaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcag 218  Q
    |||||| |||||  |||||||  ||| ||||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |||| |||||    
T  19819377 aaatcgccatgaggcaataccagttgtttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcag 19819278  T
Q  219 atataagcctacaatagtttttccaagc 246  Q
    ||||  |||| || ||||||||||||||    
T  19819277 atattggcctgcagtagtttttccaagc 19819250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19952059 - 19951814
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||| ||||||||||||||||| ||||||| |||||| |||| ||| |  |||||||||||||| ||| |  || |||| |||| || |||| ||| ||    
T  19952059 attggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgaggtctatcttttcttggacttggagttcttttctgc 19951960  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    | |||||| |||| ||||||||       | ||||||| ||||||| ||||||| ||| ||| ||  || || |||| |||||||||| | ||| |||||    
T  19951959 tgcacaatattcttaacaaaatttctgcaatccaatactgattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaa 19951860  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||||||||||| |||||||||  |||| || ||||||||||||||    
T  19951859 aatacaaatttttatcagatatgggcctgcagtagtttttccaagc 19951814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19957019 - 19956774
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||| |||||||||| ||| || ||| ||  ||| |||||||| ||  |||||||| |||| |||   |||||||||||||  ||||||||||||     
T  19957019 attgggagaaaatccaggttgaacacaaacctccataccacttctgttaaactttcctacgtgaggtctacgcttccttgaacttgaacttctcttccga 19956920  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
      |||||| ||||   |||||| | | |||   ||||| ||||||  ||||||| ||| ||| ||||||||||||||||||||||| | |||||||||||    
T  19956919 cgcacaattttcttcccaaaattgtcgtgaggaaatactgattgcacccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaa 19956820  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    ||||||| |||| |||| ||||  | || || ||||||||||||||    
T  19956819 aatacaagtttttatcatatatgggtctgcagtagtttttccaagc 19956774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20035786 - 20036031
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||| |||||||||  ||| || ||| ||| ||| |||| |||  | |||||||||||| | |||||  |  ||||||||   |||||| |||||     
T  20035786 attgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacatgtggtctgtgttgtcttgaactggaacttcttttccga 20035885  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
      |||||| || | ||||||| || | ||||| |||||  ||||||||||| || |   ||| | |||||||||||||||||||||||||||||||||||    
T  20035886 cgcacaatattgttaacaaaaacgtcgtgacctaatacaaattgcttccactacttgacataacatgtggtaacatctgcctcaaaaagtcttggtggaa 20035985  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    ||||||| |||| ||||||||| ||||| || |||||| |||||||    
T  20035986 aatacaattttttatcagatatgagcctgcagtagtttctccaagc 20036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 26647939 - 26647694
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||||||| ||||| |||| |||||||||||||| |||| ||| |  ||||||||||  |  ||| |  ||||||||||||  |||||  |||  |    
T  26647939 attgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaacttgcacttcgtttcttc 26647840  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    | |||||| |||  |||||||||  || |||||||||| ||||| ||||||||| ||| ||| || || ||||||||||||||||||| ||| | ||| |    
T  26647839 tgcacaattttcataacaaaatcatcacgacccaatactgattgtttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatggga 26647740  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||||||| |   |||||||||  | ||||| ||||||||||||||    
T  26647739 aatacaaactcctatcagatatgcgtctacagtagtttttccaagc 26647694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20033517 - 20033762
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    |||||||||||||||||||| || |||| ||||||||| ||||  || |   ||||||| | ||| |||  | || |||||||||  |||||||||  ||    
T  20033517 attgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctatacgaggtctacattttcttgaacttgcacttctcttatgc 20033616  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
      || ||| ||||  ||||||| | ||   |||| ||| ||||||||||||||  ||| ||| || |||||||||||||||||||| | |||||||||||    
T  20033617 cgcataatattcttcacaaaattgtcacagcccactactgattgcttccaccagtttgcataacgcgtggtaacatctgcctcaaataatcttggtggaa 20033716  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||||||||||| |||||| ||  ||| ||| |||||| |||||||    
T  20033717 aatacaaattttcatcagagatgggccgacagtagtttctccaagc 20033762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 19849925 - 19849724
Alignment:
Q  7 aggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgcttcaca 106  Q
    |||||||||| ||||||||||||||||||||| |||||||| |  ||||||||||  |  ||| |  || |||||||||  ||||||||| ||   ||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctacacaatgtctttgttttcttgaacttgcacttctctttcgacgcaca 19849826  T
Q  107 atgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaataca 206  Q
    |  |||| |||||||||      |||||||||||| |||||||||||| ||| ||| |||  ||||||||| ||||| ||||| || |||||||||||||    
T  19849825 actttcttaacaaaatcattgcaacccaataccgagtgcttccaccactttgcataacgtacggtaacatcagcctcgaaaagcctcggtggaaaataca 19849726  T
Q  207 aa 208  Q
    ||    
T  19849725 aa 19849724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 6397051 - 6397208
Alignment:
Q  88 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 187  Q
    ||||||||||||||||||||| |||| |||||||||  ||||||| || |||||||||||| ||||| ||| |||  |  | |||||||| ||||||||     
T  6397051 acttctcttccgcttcacaatcttcttaacaaaatctccatgacctaacaccgattgcttctaccactttgcataatgcatagtaacatcagcctcaaac 6397150  T
Q  188 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagtttttccaag 245  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| | |||||||||||||    
T  6397151 agtcttggtggaaaatacaaatttttatcagacataggcctagagtagtttttccaag 6397208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 12495261 - 12495419
Alignment:
Q  88 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 187  Q
    |||||||||| |||||||||| |||| |||||||||  |||||||||| | ||||||||||||| || ||  ||| ||  |||||| ||||||||||||     
T  12495261 acttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccacaactttacataacgcatggtaatatctgcctcaaac 12495360  T
Q  188 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||| ||||    
T  12495361 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagtttttcgaagc 12495419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 12519065 - 12519223
Alignment:
Q  88 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 187  Q
    |||||||||| |||||||||| |||| |||||||||  |||||||||| | |||||||||||||||| ||  ||| ||  ||||||  |||||||||||     
T  12519065 acttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccaccactttacataacgcatggtaatttctgcctcaaac 12519164  T
Q  188 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||| ||||    
T  12519165 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagtttttcgaagc 12519223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 12579358 - 12579510
Alignment:
Q  88 acttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaa 187  Q
    |||||||||| |||||||||| |||| ||| |||||  |||||||||| |  ||||||||||||||| ||  ||| ||  |||||| ||||||||||||     
T  12579358 acttctcttctgcttcacaatcttcttaacgaaatcttcatgacccaacattgattgcttccaccactttacataacgcatggtaatatctgcctcaaac 12579457  T
Q  188 agtcttggtggaaaatacaaattttgatcagatataagcctacaatagttttt 240  Q
    |||| ||||| |||||||||||||| || ||| || |||||| ||||||||||    
T  12579458 agtcatggtgcaaaatacaaatttttattagacatgagcctagaatagttttt 12579510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1718155 - 1717910
Alignment:
Q  1 attgggaggaaatccaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaactttgacttctcttccgc 100  Q
    ||||||||||||||||||||||| |||||||||||||| |||| ||| |  ||||||||||| || |||    ||| |||||| |  || ||||||| ||    
T  1718155 attgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacatctcttctgc 1718056  T
Q  101 ttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaa 200  Q
    | |||| | |||| ||||||||||      ||  ||||| |||||||||||||| ||| ||| |||| |||||||| | ||||||||| ||| | |||||    
T  1718055 tgcacacttttcttaacaaaatcgttgctgccagataccaattgcttccaccaccttgcataacgtgaggtaacatttccctcaaaaaatctcgatggaa 1717956  T
Q  201 aatacaaattttgatcagatataagcctacaatagtttttccaagc 246  Q
    ||||||  |||| |||||||||  |||| || |||| |||||||||    
T  1717955 aatacatttttttatcagatatgggcctgcagtagtgtttccaagc 1717910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 38483819 - 38483710
Alignment:
Q  92 ctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtc 191  Q
    ||||||| |||||||||||||| |||||||||| ||||||| |||      || ||||||||||||| ||| |||||||| ||||||||||||||||||     
T  38483819 ctcttccacttcacaatgttcttaacaaaatcgccatgacctaat------tgtttccaccacattgcataacgtgtggttacatctgcctcaaaaagta 38483726  T
Q  192 ttggtggaaaatacaa 207  Q
    | ||||||| ||||||    
T  38483725 tcggtggaatatacaa 38483710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 22655631 - 22655744
Alignment:
Q  133 caataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaa 232  Q
    |||||||  ||||||||||||| ||| |||  ||||||||||||||  |||||| | |||||||||||||||||| |||| |||||||||  | || ||     
T  22655631 caataccagttgcttccaccaccttgcataatgtgtggtaacatctatctcaaataatcttggtggaaaatacaagtttttatcagatatgggtctgcag 22655730  T
Q  233 tagtttttccaagc 246  Q
    ||||||||||||||    
T  22655731 tagtttttccaagc 22655744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 22685532 - 22685569
Alignment:
Q  10 aaatccaggtggaaaaccaacatcattacaacttctgt 47  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  22685532 aaatccaggtggaacaccaacatcattaccacttctgt 22685569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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