View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_70 (Length: 240)
Name: NF9061_low_70
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 52207615 - 52207414
Alignment:
| Q |
23 |
aggtatgtcaccaaaaacttgggaaatctaaatggtaaaactttttaaaacggctaagtttaaaacaatttccattataattttaaaaaggcaaattata |
122 |
Q |
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| T |
52207615 |
aggtatgtcaccaaaaacttgggaaatctaaatggtaaaactttttaaaacggctaagtttaaaacaatttccattataattttaaaaaggcaaattata |
52207516 |
T |
|
| Q |
123 |
ccagtcgagttctacactaataagcttggaaattgtttaatgttaaagattggttttcatgaattagaaaacaatctttcaattctttttacttcctctc |
222 |
Q |
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| T |
52207515 |
ccagtcgagttctacactaataagcttggaaattgtttaatgttaaagattggttttcatgaattggaaaacaatctttcaattctttttacttcctctc |
52207416 |
T |
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| Q |
223 |
tg |
224 |
Q |
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|| |
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| T |
52207415 |
tg |
52207414 |
T |
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