View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_72 (Length: 231)

Name: NF9061_low_72
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_72
NF9061_low_72
[»] chr2 (3 HSPs)
chr2 (22-217)||(25854394-25854589)
chr2 (22-173)||(28421530-28421681)
chr2 (62-123)||(13330757-13330818)
[»] chr4 (7 HSPs)
chr4 (30-218)||(19637312-19637500)
chr4 (32-205)||(4620163-4620336)
chr4 (62-205)||(17498385-17498528)
chr4 (32-167)||(17929934-17930069)
chr4 (32-167)||(46515538-46515673)
chr4 (62-204)||(32718156-32718298)
chr4 (32-132)||(1592632-1592732)
[»] chr3 (10 HSPs)
chr3 (35-197)||(25054016-25054178)
chr3 (29-196)||(1274691-1274858)
chr3 (32-204)||(32427644-32427816)
chr3 (22-205)||(8119431-8119613)
chr3 (62-204)||(12514198-12514340)
chr3 (62-204)||(2283132-2283274)
chr3 (62-204)||(51546598-51546740)
chr3 (62-204)||(10285325-10285467)
chr3 (73-204)||(4118862-4118993)
chr3 (62-167)||(33941616-33941721)
[»] chr5 (7 HSPs)
chr5 (31-205)||(25054598-25054772)
chr5 (62-196)||(13970415-13970549)
chr5 (62-204)||(6555584-6555726)
chr5 (62-204)||(30617110-30617252)
chr5 (62-204)||(43296714-43296856)
chr5 (32-204)||(11821037-11821209)
chr5 (62-127)||(26751073-26751138)
[»] chr8 (6 HSPs)
chr8 (31-189)||(17341072-17341225)
chr8 (30-127)||(14985840-14985937)
chr8 (31-189)||(17317524-17317677)
chr8 (32-205)||(23229581-23229754)
chr8 (72-189)||(45119592-45119709)
chr8 (73-132)||(17440882-17440941)
[»] chr7 (8 HSPs)
chr7 (32-205)||(43377381-43377554)
chr7 (62-196)||(45167334-45167468)
chr7 (22-102)||(8183515-8183595)
chr7 (63-204)||(40441592-40441733)
chr7 (62-167)||(46793176-46793281)
chr7 (62-132)||(25568661-25568731)
chr7 (62-132)||(41152070-41152140)
chr7 (62-132)||(47864865-47864935)
[»] chr6 (1 HSPs)
chr6 (22-217)||(31176602-31176797)
[»] chr1 (6 HSPs)
chr1 (62-204)||(7405479-7405621)
chr1 (62-167)||(36358613-36358718)
chr1 (62-205)||(18886013-18886156)
chr1 (62-205)||(27284903-27285046)
chr1 (74-132)||(28864765-28864823)
chr1 (72-127)||(45474463-45474518)
[»] scaffold0325 (1 HSPs)
scaffold0325 (62-167)||(5700-5805)
[»] scaffold0006 (1 HSPs)
scaffold0006 (74-204)||(27219-27349)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 25854589 - 25854394
Alignment:
Q  22 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25854589 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagttgtgttatggtgcggagagcgcatattcaagaggtgaaag 25854490  T
Q  122 agcatatgaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatgacagtggtattg 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25854489 agcatatgaaccactacatgcggatatatgtgggcgaggaccgttataactatatcttaaattgattgtatcctcccgaaaatgacagtggtattg 25854394  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 28421681 - 28421530
Alignment:
Q  22 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaag 121  Q
    ||||||||||||||||||||||||| |||||  ||  || ||||||| | ||||||||||| ||||||||||  || | | | |||||||||| ||||||    
T  28421681 ggcaatgagaattgtgggtttaaggctatagccgaatccttgggtttgacggaagaaagtcatgttatggtgtggatatcacttattcaagagatgaaag 28421582  T
Q  122 agcatatgaaccactacatgcagatatatgtgggcgaggaccgttataacta 173  Q
    || ||| |||| | || |||| |||||||| |||||||| ||||||||||||    
T  28421581 agaataagaacgaataaatgcggatatatgcgggcgagggccgttataacta 28421530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 13330757 - 13330818
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagag 123  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| ||||||||    
T  13330757 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagag 13330818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 19637312 - 19637500
Alignment:
Q  30 gaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatg 129  Q
    ||||||||||||||||| |||||||||| |||| ||||| | ||||||||||| |||||| ||||||| ||| | ||||| |||||||||||||||||||    
T  19637312 gaattgtgggtttaaggctatagttgagtccattggtttgacggaagaaagtcatgttatagtgcagatagcacttattcgagaggtgaaagagcatatg 19637411  T
Q  130 aaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatgacagtggtattga 218  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||  ||||||  |||||| ||||    
T  19637412 aaccactacatgccgatatatgggggcgaggaccgttataactatatcttgaatggattgcatcttccaaaaaatggtagtggttttga 19637500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 4620163 - 4620336
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || |||||  ||  || ||||||| | ||||||||||| |||||||||||||||||| | |||| ||||| |||||||||||| ||     
T  4620163 attgtgggtttagggctatagccgaatccgtgggtttgacggaagaaagtcatgttatggtgcagagagcacttattaaagagttgaaagagcataggag 4620262  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    | | |||||  ||||||||| | |||||  |||||| ||||| |||||| || |||||||||||||| ||||||    
T  4620263 caaatacatcgagatatatgcgagcgagcgccgttacaactacatcttggatggattgtatcctcccaaaaatg 4620336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 17498385 - 17498528
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||| ||| |||||| | |||| ||||| |||||||||||  |||| | |||||  ||||||||| | |||||      
T  17498385 tgggtttgacggaagaaagtcatgttatgttgcggagagcacttattaaagagttgaaagagcattggaacaaatacatcgagatatatgcgagcgagcg 17498484  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
     ||||| ||||| |||||| || |||||||||||||| ||||||    
T  17498485 tcgttacaactacatcttggatggattgtatcctcccaaaaatg 17498528  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 17929934 - 17930069
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || ||| | ||| | | ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||    
T  17929934 attgtgggtttagggctattgctgaacgcgtgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaa 17930033  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgtta 167  Q
    | | ||||   || |||||| | |||||||||||||    
T  17930034 caaatacaccgaggtatatgcgagcgaggaccgtta 17930069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 46515673 - 46515538
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || ||| || || | | ||||||| | |||||||| || ||||||||||| |||||| | |||| ||||| ||||||||||||||||    
T  46515673 attgtgggtttagggctattgtcgaacgcgtgggtttgacggaagaaattcatgttatggtgcggagagcacttattaaagagttgaaagagcatatgaa 46515574  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgtta 167  Q
    | | ||||   || |||||| | |||||||||||||    
T  46515573 caaatacaccgaggtatatgcgagcgaggaccgtta 46515538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 32718156 - 32718298
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||    |||| ||||| |||||||||||| |||| | |||||  || |||||| | ||| |||    
T  32718156 tgggtttgacggaagaaagtcatgttatggtgcggagagtagttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagcgcgga 32718255  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| || || || ||| || ||||| |||||||| |||||    
T  32718256 ccgttacaagtacattttggatggattgcatcctcccaaaaat 32718298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 1592632 - 1592732
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || ||||| |||   | ||||||| | |||| |||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||    
T  1592632 attgtgggtttagggctatagctgaatgcgtgggtttgacggaataaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaa 1592731  T
Q  132 c 132  Q
    |    
T  1592732 c 1592732  T

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Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 25054178 - 25054016
Alignment:
Q  35 gtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaacca 134  Q
    ||||||||| || |||||  ||| |||||||||| | ||||||||||| ||||||||||| |||||| | ||||  ||||||||||| ||||| ||||||    
T  25054178 gtgggtttagggctatagccgagtccatgggtttgacggaagaaagtcatgttatggtgcggagagcacttatttgagaggtgaaagtgcataagaacca 25054079  T
Q  135 ctacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcc 197  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||    
T  25054078 ctacatgcagatatatgcgggcgaggaccgttataactatattttgaatggattgcatcctcc 25054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 1274858 - 1274691
Alignment:
Q  29 agaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatat 128  Q
    |||||||||| |||| || |||||  ||  |||||||||| | |||| |||||  |||||||||||  ||||| | |||||||||| ||||||||||||     
T  1274858 agaattgtggttttagggctatagccgaatccatgggtttgacggaataaagtaatgttatggtgcgaagagcacttattcaagagttgaaagagcatag 1274759  T
Q  129 gaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctc 196  Q
    |||| |||||||  ||||||||| ||||||||||| ||||||||| ||||||||| ||||| ||||||    
T  1274758 gaacgactacatcgagatatatgcgggcgaggaccattataactaaatcttgaatggattgcatcctc 1274691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 32427644 - 32427816
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    ||||||||||||||| ||| |  || | | ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| ||||||||||||||||    
T  32427644 attgtgggtttaaggctattgccgaacgcgtgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcatatgaa 32427743  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    | | |||||  || |||||| | ||| ||||||||| || || || ||| || ||||| |||||||| |||||    
T  32427744 caaatacatcgaggtatatgcgagcgcggaccgttacaagtacattttggatggattgcatcctcccaaaaat 32427816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 8119431 - 8119613
Alignment:
Q  22 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaag 121  Q
    ||||||| |||||||||||||| || ||||| |||| ||||| ||||  | |||| ||||| ||| ||||||| |||| |   ||||| |||| ||||||    
T  8119431 ggcaatgggaattgtgggtttagggctatagctgagtccatgagtttggtagaaggaagtcatgtaatggtgcggagaacatttattcgagagatgaaag 8119530  T
Q  122 agcatatgaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
     ||||| |||||||||||||  ||||||||  || ||||   |||||||||||||||| ||| ||||| |||||||| ||||||    
T  8119531 tgcataggaaccactacatg-ggatatatgcaggtgagggatgttataactatatcttaaatggattgcatcctcccaaaaatg 8119613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 12514198 - 12514340
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||| | |||||  || || ||| | |||||||    
T  12514198 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtaaatgcgagcgagga 12514297  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| ||||| || ||| || |||||  ||||||| |||||    
T  12514298 ccgttacaactacattttggatggattgcttcctcccaaaaat 12514340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 2283274 - 2283132
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| ||||||| |||| |||| | |||||  || |||||| | ||| |||    
T  2283274 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagaacataggaacaaatacatcgaggtatatgcgagcgcgga 2283175  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| ||||| || ||| || ||||| || ||||| |||||    
T  2283174 ccgttacaactacattttggatggattgcatactcccaaaaat 2283132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 51546740 - 51546598
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||| | |||||  || |||||| | | | |||    
T  51546740 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagtgcgga 51546641  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| || || || ||| || ||||| |||||||| |||||    
T  51546640 ccgttacaagtacattttggatggattgcatcctcccaaaaat 51546598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 10285467 - 10285325
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||  | |||||||||||| |||| | |||||  || |||||| | |||||||    
T  10285467 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaaatgttgaaagagcataggaacaaatacatagaggtatatgcgagcgagga 10285368  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| || || || ||| || ||||| |||| ||| |||||    
T  10285367 ccgttacaagtacattttggatggattgcatccccccaaaaat 10285325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 4118993 - 4118862
Alignment:
Q  73 gaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgaggaccgttataact 172  Q
    |||||||||||||||||||||| |||||| | |||| ||||  ||||||||||||  ||  | |||||  || |||||| | ||| ||||||||| || |    
T  4118993 gaagaaagtcgtgttatggtgcggagagcacttattaaagatttgaaagagcatagaaataaatacatcgaggtatatgcgagcgcggaccgttacaagt 4118894  T
Q  173 atatcttgaattgattgtatcctcccgaaaat 204  Q
    | || ||| || ||||| |||||||| |||||    
T  4118893 acattttggatggattgcatcctcccaaaaat 4118862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 33941616 - 33941721
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | |||||||| || ||||||||||| |||||| | |||| ||||| | |||||||||| |||| | |||||  |  |||||||| ||| |||    
T  33941616 tgggtttgacggaagaaattcatgttatggtgcggagagcacttattaaagagtttaaagagcataggaacaaatacatcgatgtatatgtgagcgtgga 33941715  T
Q  162 ccgtta 167  Q
    ||||||    
T  33941716 ccgtta 33941721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 25054598 - 25054772
Alignment:
Q  31 aattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatga 130  Q
    ||||||||||||| || |||||  ||  |||||||||| |  |||||||||  ||||||||||| |||||| | ||||||||||||||||||||||| ||    
T  25054598 aattgtgggtttagggctatagccgaatccatgggtttgacagaagaaagtaatgttatggtgcggagagcacttattcaagaggtgaaagagcatagga 25054697  T
Q  131 accactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    || |||||||  ||||||||||| ||||   |||||||||||| ||||||||| ||||| |||||||| ||||||    
T  25054698 acgactacatcgagatatatgtgagcgactgccgttataactacatcttgaatggattgcatcctcccaaaaatg 25054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 13970415 - 13970549
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | |||| |||||| ||||||| | |||||||| | |||||||||| |||||||||||| |||| ||||||||| |||||||| ||||||||     
T  13970415 tgggtttgacggaataaagtcatgttatgatacagagagcacttattcaagagatgaaagagcataagaacgactacatgcggatatatgcgggcgaggg 13970514  T
Q  162 ccgttataactatatcttgaattgattgtatcctc 196  Q
    |||||||||||| ||||||||| ||||| ||||||    
T  13970515 ccgttataactacatcttgaatggattgcatcctc 13970549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 6555584 - 6555726
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| |||||||||||||||||| | |||| ||||| |||||||||||| |||| | |||||  || |||||| | ||| |||    
T  6555584 tgggtttgacggaagaaagtcatgttatggtgcagagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagcgcgga 6555683  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| || || || ||| || ||||| |||||||| |||||    
T  6555684 ccgttacaagtacattttggatggattgcatcctcccaaaaat 6555726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 30617252 - 30617110
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||| | |||||  || ||||| || ||| |||    
T  30617252 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatatgagcgcgga 30617153  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    | |||| || || || ||| || ||||| |||||||| |||||    
T  30617152 ctgttacaagtacattttggatggattgcatcctcccaaaaat 30617110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 43296714 - 43296856
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | | || ||||| |||||||||||| |||| | |||||  || |||||| | ||| |||    
T  43296714 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttgttaaagagttgaaagagcatacgaacaaatacatcgaggtatatgcgagcgcgga 43296813  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    |||||| || || || ||| || ||||| |||||||| |||||    
T  43296814 ccgttacaagtacattttggatggattgcatcctcccaaaaat 43296856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 11821037 - 11821209
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || |||||  ||  || ||||||| ||||||||||||| ||||||||||| || ||| | |||| ||||| ||||||| |||| ||     
T  11821037 attgtgggtttagggctatagccgaatccgtgggtttgatggaagaaagtcatgttatggtgcggatagcacttattaaagagttgaaagaacataggag 11821136  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    | | |||||  |||||||||   |||||  ||| || ||||| |||||| || ||||| |||||||| |||||    
T  11821137 caaatacattgagatatatgcaagcgagccccgctacaactacatcttggatggattgcatcctcccaaaaat 11821209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 26751073 - 26751138
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcata 127  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| | ||||||||||    
T  26751073 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagtttaaagagcata 26751138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 17341072 - 17341225
Alignment:
Q  31 aattgtgggtttaagg--atatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatat 128  Q
    ||||||||||||| ||  ||||||  ||| ||||||||||  || |||||| || ||||||||||| |||||       || ||||||||||||||||||    
T  17341072 aattgtgggtttagggctatatagccgagtccatgggtttggtgaaagaaattcatgttatggtgcggagag-------tcgagaggtgaaagagcatat 17341164  T
Q  129 gaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattg 189  Q
    |||||||||||||| |||||||| ||| || ||||||||||| ||||||||||||||||||    
T  17341165 gaaccactacatgcggatatatgggggtgaagaccgttataattatatcttgaattgattg 17341225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 14985937 - 14985840
Alignment:
Q  30 gaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcata 127  Q
    |||||||||||||| || ||||| |||| || ||||||| || |||||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  14985937 gaattgtgggtttagggctatagctgagtccttgggtttgatagaagaaagtcatgttatggtgcagagagcacttattcaagaggtgaaagagcata 14985840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 17317524 - 17317677
Alignment:
Q  31 aattgtgggtttaagg--atatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatat 128  Q
    ||||||||||||||||  |||||| | || | |||||||| | |||||||| || ||||||||||| |||||       || |||||||||||||||||     
T  17317524 aattgtgggtttaaggctatatagctcagactatgggtttgacggaagaaattcatgttatggtgcggagag-------tcgagaggtgaaagagcatag 17317616  T
Q  129 gaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattg 189  Q
    |||||||||||||| |||||||| ||| ||  || ||||||| ||||||||||||||||||    
T  17317617 gaaccactacatgcggatatatgggggtgaaaactgttataattatatcttgaattgattg 17317677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 23229581 - 23229754
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    ||||||||||||||| |||||  ||   | ||||||| |  |||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||    
T  23229581 attgtgggtttaaggctatagccgaatgcgtgggtttgacagaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaa 23229680  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    |   |||||  ||||||||| | |||||  || ||| ||||| |||||| || ||||| |||||||||||||||    
T  23229681 catatacatcgagatatatgcgagcgagtgccattacaactacatcttggatggattgcatcctcccgaaaatg 23229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 45119592 - 45119709
Alignment:
Q  72 ggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgaggaccgttataac 171  Q
    ||||||||||  ||||||||||| |||| | | |||| ||||| ||||||||||||||||| | |||||  || |||||| | ||||||||| ||| ||     
T  45119592 ggaagaaagttatgttatggtgcggagaacacttattaaagagttgaaagagcatatgaacaaatacatcgaggtatatgcgagcgaggaccattacaag 45119691  T
Q  172 tatatcttgaattgattg 189  Q
    ||||| ||| || |||||    
T  45119692 tatattttggatggattg 45119709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 17440882 - 17440941
Alignment:
Q  73 gaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaac 132  Q
    |||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| ||||    
T  17440882 gaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcatacgaac 17440941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 43377554 - 43377381
Alignment:
Q  32 attgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaa 131  Q
    |||||||||||| || |||||  ||  || ||||||| | ||||||||||| ||||||||||| |||| | | |||| ||||| |||||||||||| ||     
T  43377554 attgtgggtttagggctatagccgaatccgtgggtttgacggaagaaagtcatgttatggtgcggagaacacttattaaagagttgaaagagcataagag 43377455  T
Q  132 ccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    | | |||||  ||||||||| | |||||  |||||| ||| | |||||| || |||||||||||||| ||||||    
T  43377454 caaatacatcgagatatatgcgagcgagcgccgttacaaccacatcttggatggattgtatcctcccaaaaatg 43377381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 45167468 - 45167334
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| ||||||||||||| |||||| ||||||||||| | |||| ||||| |||||||||||| |||| | |||||  || |||||| | |||  ||    
T  45167468 tgggtttgatggaagaaagtcatgttatagtgcagagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagcgccga 45167369  T
Q  162 ccgttataactatatcttgaattgattgtatcctc 196  Q
    |||||| ||||| || ||| || ||||| ||||||    
T  45167368 ccgttacaactacattttggatggattgcatcctc 45167334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 8183595 - 8183515
Alignment:
Q  22 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcg 102  Q
    |||||||||||||||||||||| || ||||   ||| || ||||||| ||||||||||||| ||||||||||| |||||||    
T  8183595 ggcaatgagaattgtgggtttagggctataaccgagtccttgggtttgatggaagaaagtcatgttatggtgccgagagcg 8183515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 40441733 - 40441592
Alignment:
Q  63 gggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgaggac 162  Q
    |||||| | ||||||||||| |||||||||||  ||||| | |||| ||||| |||||||||||| |||| | |||||  || |||||| | ||| ||||    
T  40441733 gggtttgacggaagaaagtcatgttatggtgcgaagagcacttattaaagagttgaaagagcataggaacaaatacattgaggtatatgcgagcgcggac 40441634  T
Q  163 cgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    ||||| || || || ||| || ||||| |||||||| |||||    
T  40441633 cgttacaagtacattttggatggattgcatcctcccaaaaat 40441592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 46793176 - 46793281
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||| | | |||| ||||| |||||||||| |||||| | |||||  || |||||| | |||||||    
T  46793176 tgggtttgacggaagaaagtcatgttatggtgcggagatcacttattaaagagttgaaagagcacatgaacaaatacatcgaggtatatgcgagcgagga 46793275  T
Q  162 ccgtta 167  Q
    ||||||    
T  46793276 ccgtta 46793281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 25568731 - 25568661
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaac 132  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| ||||    
T  25568731 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaac 25568661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 41152070 - 41152140
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaac 132  Q
    ||||||| | ||||| ||||| ||||||||||| |||||| | |||| ||||| |||||||||||||||||    
T  41152070 tgggtttgacggaaggaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcatatgaac 41152140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 47864935 - 47864865
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaac 132  Q
    ||||||| | ||||||||||| ||||||||||  |||||| | |||| ||||| |||||||||||| ||||    
T  47864935 tgggtttgacggaagaaagtcatgttatggtgtggagagcacttattaaagagttgaaagagcataggaac 47864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 31176602 - 31176797
Alignment:
Q  22 ggcaatgagaattgtgggtttaaggatatagttgagcccatgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaag 121  Q
    |||||||| ||||||||||||  || ||||| ||||  |||| |||| ||| ||||||||| ||||||||| || | | | | |||||||||||||||||    
T  31176602 ggcaatgaaaattgtgggtttcgggctatagctgagtacatgtgtttgatgaaagaaagtcatgttatggttcacataacacttattcaagaggtgaaag 31176701  T
Q  122 agcatatgaaccactacatgcagatatatgtgggcgaggaccgttataactatatcttgaattgattgtatcctcccgaaaatgacagtggtattg 217  Q
    | |||| ||   |||| || ||||||||| |  | || || |||| |||||||||||||||| ||||| ||| || |||||||   ||||||||||    
T  31176702 aacataggagagactatattcagatatattttagtgatgatcgttttaactatatcttgaatggattgcatcatctcgaaaatagtagtggtattg 31176797  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 7405479 - 7405621
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| |||||||||||||||||| | |||| ||||| ||||||||||||  ||| | |||||  || |||||| | ||| |||    
T  7405479 tgggtttgacggaagaaagtcatgttatggtgcagagagcacttattaaagagttgaaagagcatagaaacaaatacatcgaggtatatgcgagcgcgga 7405578  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaat 204  Q
    || ||| || || || ||| || ||||| |||||||| |||||    
T  7405579 ccattacaagtacattttggatggattgcatcctcccaaaaat 7405621  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 36358718 - 36358613
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||| |||| | |||||  || |||||| | |||||||    
T  36358718 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagcgagga 36358619  T
Q  162 ccgtta 167  Q
     |||||    
T  36358618 tcgtta 36358613  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 18886156 - 18886013
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | |||||||||||  |||||||||  |||||| | |||| ||||| |||||| ||||| |||| | || ||  ||||||||| | ||| | |    
T  18886156 tgggtttgacggaagaaagtcaagttatggtgtggagagcacttattaaagagttgaaagcgcataggaacaaatatatcgagatatatgggagcgcgca 18886057  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    |||||| ||||| |||||| || ||||| |||||||| ||||||    
T  18886056 ccgttacaactacatcttggatggattgcatcctcccaaaaatg 18886013  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 27284903 - 27285046
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| ||||||||||| |||||| | |||| ||||| | ||||||||||  ||| | |||||  ||||||||| | |||||      
T  27284903 tgggtttgacggaagaaagtcatgttatggtgcggagagcacttattaaagagttcaaagagcatagaaacaaatacatcgagatatatgcgagcgagcg 27285002  T
Q  162 ccgttataactatatcttgaattgattgtatcctcccgaaaatg 205  Q
    || ||| ||||| |||||| || ||||  |||||||| ||||||    
T  27285003 ccattacaactacatcttggatggattacatcctcccaaaaatg 27285046  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 28864765 - 28864823
Alignment:
Q  74 aagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaac 132  Q
    ||||||||| ||||||||||| |||||| | |||| ||||| |||||||||||||||||    
T  28864765 aagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcatatgaac 28864823  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 45474463 - 45474518
Alignment:
Q  72 ggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcata 127  Q
    ||||||||||| ||||||||||| |||||| | |||| ||||| ||||||||||||    
T  45474463 ggaagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagagcata 45474518  T

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Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 5700 - 5805
Alignment:
Q  62 tgggtttcatggaagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgagga 161  Q
    ||||||| | ||||||||||| || |||||||| |||| | | |||| ||||| |||||||||||| |||| | |||||  || |||||| | |||||||    
T  5700 tgggtttgacggaagaaagtcatgctatggtgcggagaacacttattaaagagttgaaagagcataggaacaaatacatcgaggtatatgcgagcgagga 5799  T
Q  162 ccgtta 167  Q
    ||||||    
T  5800 ccgtta 5805  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 27349 - 27219
Alignment:
Q  74 aagaaagtcgtgttatggtgcagagagcgcatattcaagaggtgaaagagcatatgaaccactacatgcagatatatgtgggcgaggaccgttataacta 173  Q
    ||||||||| ||||||||||| |||||| | |||| ||||| ||||||| |||| |||| | |||||  || |||||| | | | ||||||||| || ||    
T  27349 aagaaagtcatgttatggtgcggagagcacttattaaagagttgaaagaacataggaacaaatacatcgaggtatatgcgagtgcggaccgttacaagta 27250  T
Q  174 tatcttgaattgattgtatcctcccgaaaat 204  Q
     || ||| || ||||| |||||||| |||||    
T  27249 cattttggatggattgcatcctcccaaaaat 27219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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