View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9061_low_84 (Length: 202)
Name: NF9061_low_84
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9061_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 8571950 - 8571772
Alignment:
| Q |
1 |
aggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtt |
100 |
Q |
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| T |
8571950 |
aggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtaaaagatcaaattggtagtt |
8571851 |
T |
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| Q |
101 |
tctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
179 |
Q |
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| T |
8571850 |
tctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
8571772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 28940921 - 28940785
Alignment:
| Q |
14 |
aagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtttctattatttccc |
113 |
Q |
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| T |
28940921 |
aagatggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttcc |
28940822 |
T |
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| Q |
114 |
atctcttgcattccacaaagctgctggtggttttgga |
150 |
Q |
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| T |
28940821 |
atctcttgcttttcacaaggcagctggtggttttgga |
28940785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 53754562 - 53754384
Alignment:
| Q |
1 |
aggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtt |
100 |
Q |
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|||||||||| ||||||||| || | ||||||||||| ||||| ||||| || | |||||||||||| || ||||||||||| ||||||||||| || | |
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| T |
53754562 |
aggaactcattcgaagatggtgtttcgggaacaacatgccccatcccaccagggaggaacttcacatatattcttcaagtgaaggatcaaattggaagct |
53754463 |
T |
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| Q |
101 |
tctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaat |
179 |
Q |
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| || || || |||||||| ||||| || ||||| ||||||||||||||||| ||||| || || ||||| || ||||| |
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| T |
53754462 |
tttactactttccatctctagcatttcaaaaagcagctggtggttttggaggcattaggatactcagtagacctagaat |
53754384 |
T |
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