View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9061_low_9 (Length: 580)

Name: NF9061_low_9
Description: NF9061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9061_low_9
NF9061_low_9
[»] chr6 (3 HSPs)
chr6 (17-562)||(10116826-10117376)
chr6 (293-434)||(32296309-32296445)
chr6 (392-445)||(9177634-9177684)
[»] chr8 (4 HSPs)
chr8 (309-445)||(23490047-23490177)
chr8 (369-445)||(7154346-7154422)
chr8 (369-420)||(14867355-14867406)
chr8 (294-348)||(45191712-45191766)
[»] chr2 (14 HSPs)
chr2 (309-445)||(37794729-37794859)
chr2 (369-445)||(17989065-17989140)
chr2 (369-445)||(35016459-35016534)
chr2 (316-413)||(5428609-5428701)
chr2 (34-73)||(1403193-1403232)
chr2 (17-73)||(821079-821135)
chr2 (294-405)||(19263717-19263824)
chr2 (443-510)||(409818-409885)
chr2 (453-504)||(1399319-1399370)
chr2 (34-73)||(1399488-1399527)
chr2 (453-504)||(1403014-1403065)
chr2 (482-536)||(404557-404611)
chr2 (242-287)||(5428507-5428552)
chr2 (243-287)||(19263638-19263682)
[»] chr7 (9 HSPs)
chr7 (294-445)||(25635981-25636127)
chr7 (212-445)||(47363781-47364014)
chr7 (377-443)||(39653536-39653602)
chr7 (380-445)||(45435419-45435484)
chr7 (316-445)||(10493487-10493610)
chr7 (17-68)||(12105209-12105260)
chr7 (34-67)||(1446106-1446139)
chr7 (458-510)||(1446151-1446203)
chr7 (369-424)||(33049132-33049187)
[»] chr4 (7 HSPs)
chr4 (314-445)||(28146949-28147074)
chr4 (305-445)||(38411946-38412081)
chr4 (315-445)||(55606324-55606448)
chr4 (309-434)||(11440550-11440670)
chr4 (322-445)||(13198158-13198275)
chr4 (316-438)||(25967966-25968084)
chr4 (386-445)||(46308430-46308488)
[»] chr1 (6 HSPs)
chr1 (315-434)||(32617658-32617771)
chr1 (310-442)||(34664741-34664867)
chr1 (387-445)||(12990549-12990606)
chr1 (320-431)||(24699887-24699993)
chr1 (309-445)||(9457578-9457709)
chr1 (309-445)||(9461675-9461806)
[»] chr3 (6 HSPs)
chr3 (287-445)||(11783484-11783637)
chr3 (295-437)||(7299054-7299192)
chr3 (445-534)||(45810728-45810817)
chr3 (17-73)||(45810565-45810621)
chr3 (371-420)||(19596541-19596590)
chr3 (369-414)||(21926543-21926588)
[»] chr5 (6 HSPs)
chr5 (315-446)||(39426166-39426292)
chr5 (313-438)||(22927149-22927270)
chr5 (318-437)||(13424721-13424835)
chr5 (379-445)||(41283518-41283582)
chr5 (314-412)||(16341522-16341619)
chr5 (463-519)||(36198875-36198931)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 562
Target Start/End: Original strand, 10116826 - 10117376
Alignment:
Q  17 atatcccaatcatagaggagcaccaaatgagtcaaattatggaat---gtaggaaagtcacagggctgatgataaatctacattatttttaaaaaagagt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10116826 atatcccaatcatagaggagcaccaaatgagtcaaattatggaatattgtaggaaactcacagggctgatgataaatctacattatttttaaaaaagagt 10116925  T
Q  114 attaaaaattagggtgaaattctctaaaataaagaatacaatgaatcacattattctttttcaacgacatgcatccaaggtttttnnnnnnn----cagt 209  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||             ||||    
T  10116926 attaaaaattaaagtgaaattctctaaaataaataatacaatgaatcacattattctttttcaacgacatgcatccaaggtttaaaaaaaaaaaaacagt 10117025  T
Q  210 ctgttaccgaga--aaaggccacgacaaagaggtatataggtagccgacattaccgtttttacattgtggacaaaaatcaaaccctgttacggccacaaa 307  Q
    ||||||||||||  |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  10117026 ctgttaccgagagaaaaggccacgacaaagaggtata--ggtagccgacattaccgtttttacattgtggacaaaaatcaaacactgttaaggccgcaaa 10117123  T
Q  308 gaatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaatta 407  Q
     ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  10117124 aaatgtcgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacatatttgatcataaatta 10117223  T
Q  408 cataatgttatctccttatctagtttagaactccaaataatgagacaaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcg 507  Q
    |||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  10117224 cataa--taatctccttatctagtttagaactccaaataatgagacaaaccttgaatagttgtatgcctagaaactccaaatttgaaagtgctttcatcg 10117321  T
Q  508 gaatataacaataacacatggtaatatatgctctttttaattatcttaagttttc 562  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10117322 gaatataacaataacacatggtaatatatgctctttttaattgtcttaagttttc 10117376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 293 - 434
Target Start/End: Original strand, 32296309 - 32296445
Alignment:
Q  293 tgttacggccacaaagaatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacata 392  Q
    ||||||||||||||| ||||  ||||||||||||||||||| |||  | |||||||  |||||||||||||||||     ||| |||||||| |||||||    
T  32296309 tgttacggccacaaaaaatgcggttcatgacaatagacacaaaatctgaatattttttcaattgagatagatgaa-----aatcatatttttagtacata 32296403  T
Q  393 tttgatcataaattacataatgttatctccttatctagttta 434  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  32296404 tttgatcataagttacataatggtatctccttatatagttta 32296445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 9177634 - 9177684
Alignment:
Q  392 atttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||||||    
T  9177634 atttgatcataaattacataatgttatctc---acctagtttagaactccaaat 9177684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 309 - 445
Target Start/End: Complemental strand, 23490177 - 23490047
Alignment:
Q  309 aatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattac 408  Q
    |||| |||||||||||||||||| || || ||||||||||  |||||||||||||||||     ||| |||||||| |||||||||||||||||||||||    
T  23490177 aatgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaa-----aatcatatttttcgtacatatttgatcataaattac 23490083  T
Q  409 ataatgttatctccttatctagtttagaactccaaat 445  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23490082 ataa-gttatctccttatctagtttagaactccaaat 23490047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 7154422 - 7154346
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||| ||||||||  |||||||||||||||| ||||||||||  |||||||||||||  || ||||||| ||||    
T  7154422 tgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttatctgattcagaactcaaaat 7154346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 14867406 - 14867355
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatgttatct 420  Q
    ||||||| | |||||| |||||||||||| |||||||||||| |||||||||    
T  14867406 tgaaaatcacatttttagtacatatttgaacataaattacatgatgttatct 14867355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 45191766 - 45191712
Alignment:
Q  294 gttacggccacaaagaatgtcgttcatgacaatagacacagaattcggatatttt 348  Q
    ||||||||| | || |||||||||||||||||| |||||| ||||| ||||||||    
T  45191766 gttacggccgccaaaaatgtcgttcatgacaatggacacaaaattcagatatttt 45191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 445
Target Start/End: Complemental strand, 37794859 - 37794729
Alignment:
Q  309 aatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattac 408  Q
    ||||||||||||||||| ||||| |||||  |||||||||  |||||||||||||      |||||| |||||||| |||||||||||||||||||||||    
T  37794859 aatgtcgttcatgacaaaagacatagaatctggatattttttcaattgagataga-----agaaaatcatatttttagtacatatttgatcataaattac 37794765  T
Q  409 ataatgttatctccttatctagtttagaactccaaat 445  Q
    |||| ||||||||||||||||||||||||||||||||    
T  37794764 ataa-gttatctccttatctagtttagaactccaaat 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 17989140 - 17989065
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17989140 tgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagtttagaactccaaat 17989065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 35016534 - 35016459
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  35016534 tgaaaatcatatttttgatacatatttgatcataaattatataa-gttatctccttatctagtttagaattccaaat 35016459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 5428609 - 5428701
Alignment:
Q  316 ttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataat 413  Q
    |||||||||||||||||| |||| ||||||| |  |||||||||||||     ||||||| ||||| || ||||||| ||||||||||||||||||||    
T  5428609 ttcatgacaatagacacaaaatttggatattatttcaattgagataga-----tgaaaatcatattattagtacataattgatcataaattacataat 5428701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 1403232 - 1403193
Alignment:
Q  34 gagcaccaaatgagtcaaattatggaatgtaggaaagtca 73  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  1403232 gagcaccagatgagtcaaattatggaatgtaggaaagtca 1403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 821135 - 821079
Alignment:
Q  17 atatcccaatcatagaggagcaccaaatgagtcaaattatggaatgtaggaaagtca 73  Q
    |||| ||||||||||  | |||||||||| ||||||||||| |||||||||||||||    
T  821135 atattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtca 821079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 405
Target Start/End: Original strand, 19263717 - 19263824
Alignment:
Q  294 gttacggccacaaagaa-tgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacata 392  Q
    ||||||||| |||| || ||||||||||||||||||| | |||||   |||||| |  |||||||||||||     ||||||| ||||||||  ||||||    
T  19263717 gttacggccgcaaaaaactgtcgttcatgacaatagatatagaatcaagatattgtttcaattgagataga-----tgaaaatcatatttttaatacata 19263811  T
Q  393 tttgatcataaat 405  Q
    |||||||||||||    
T  19263812 tttgatcataaat 19263824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 409885 - 409818
Alignment:
Q  443 aataatgagacaaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaa 510  Q
    ||||| || ||||||||  ||||||||||| | || |||||||||||||||||| | |||||||||||    
T  409885 aataacgaaacaaacctccaatagttgtatacgtagaaactccaaatttgaaagcgatttcatcggaa 409818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 1399370 - 1399319
Alignment:
Q  453 caaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttca 504  Q
    ||||||||| |||||||||||| || |||||||| ||||||||||| |||||    
T  1399370 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1399319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 1399527 - 1399488
Alignment:
Q  34 gagcaccaaatgagtcaaattatggaatgtaggaaagtca 73  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  1399527 gagcaccagatgagtcaaattatggaatgtagaaaagtca 1399488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 1403065 - 1403014
Alignment:
Q  453 caaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttca 504  Q
    ||||||||| |||||||||||| || |||||||| ||||||||||| |||||    
T  1403065 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1403014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 404611 - 404557
Alignment:
Q  482 ctccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatatat 536  Q
    ||||| ||||||||||||||||||||||| ||| |||||| | | ||||||||||    
T  404611 ctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatat 404557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 5428507 - 5428552
Alignment:
Q  242 atataggtagccgacattaccgtttttacattgtggacaaaaatca 287  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||||||    
T  5428507 atataggtagccgacgttaccgtttttacagagtgaacaaaaatca 5428552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 19263638 - 19263682
Alignment:
Q  243 tataggtagccgacattaccgtttttacattgtggacaaaaatca 287  Q
    |||||||||||||| ||||| |||||||| |||| ||||||||||    
T  19263638 tataggtagccgacgttaccatttttacaatgtgaacaaaaatca 19263682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 445
Target Start/End: Complemental strand, 25636127 - 25635981
Alignment:
Q  294 gttacggccacaaagaatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatat 393  Q
    |||||||||  ||| ||||||||||||||||||| ||||| ||| ||| ||||||  ||||||| |||||||||     ||| |||| ||| ||||||||    
T  25636127 gttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcaattgaaatagatgaa-----aatcatatctttagtacatat 25636033  T
Q  394 ttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25636032 ttaatcataaattacataatgttatctccttgtctagtttagaactccaaat 25635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 212 - 445
Target Start/End: Complemental strand, 47364014 - 47363781
Alignment:
Q  212 gttaccgagaaaa-ggccacgacaaagaggtatataggtagccgacattaccgtttttacattgtggacaaaaatca------aaccctgttacggccac 304  Q
    ||||||||||||| |||||| ||||| ||   |||||||||| ||| |||||||||||| |  ||||||||||||||      ||| | | |||| || |    
T  47364014 gttaccgagaaaaaggccaccacaaaaag---tataggtagcggacgttaccgtttttataaagtggacaaaaatcacgacgaaacaccgatacgaccgc 47363918  T
Q  305 aaagaat-gtcgttcatgacaatagacacagaattcggatattttcccaattgagat-agatgaattgaaaattatatttttggtacatatttgatcata 402  Q
    ||| ||| | |||||||||||||||||| ||||| ||||||||||  |||||||||| |||||||     ||  |||||||| |||||||||||||||||    
T  47363917 aaaaaattgccgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaa-----aagcatatttttagtacatatttgatcata 47363823  T
Q  403 aattacataatgttatctccttatctagtttagaactccaaat 445  Q
     ||||||||| |||||||||||||||||||||||||| |||||    
T  47363822 gattacataa-gttatctccttatctagtttagaacttcaaat 47363781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 39653602 - 39653536
Alignment:
Q  377 atatttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaa 443  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39653602 atatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaa 39653536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 45435419 - 45435484
Alignment:
Q  380 tttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  45435419 tttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 445
Target Start/End: Complemental strand, 10493610 - 10493487
Alignment:
Q  316 ttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatgt 415  Q
    ||||| |||||||||||| |||  | |||||||  |||||||||| ||||||      || ||||||||  | |||||||||||||||||||||||||||    
T  10493610 ttcataacaatagacacataatatgtatattttttcaattgagatggatgaa------atcatatttttaatgcatatttgatcataaattacataatgt 10493517  T
Q  416 tatctccttatctagtttagaactccaaat 445  Q
    ||||||||||| ||||||||| ||||||||    
T  10493516 tatctccttatatagtttagacctccaaat 10493487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 12105260 - 12105209
Alignment:
Q  17 atatcccaatcatagaggagcaccaaatgagtcaaattatggaatgtaggaa 68  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  12105260 atatcccaattatagcagagcaccaaatgagtcaaattatggaatgtaggaa 12105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 1446106 - 1446139
Alignment:
Q  34 gagcaccaaatgagtcaaattatggaatgtagga 67  Q
    ||||||||||||||||||||||||||||||||||    
T  1446106 gagcaccaaatgagtcaaattatggaatgtagga 1446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 1446151 - 1446203
Alignment:
Q  458 cttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaa 510  Q
    |||| |||||| ||||| || |||||||| |||||||||||||||||||||||    
T  1446151 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaa 1446203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 33049132 - 33049187
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatgttatctcctt 424  Q
    ||||||| | |||||| |||||||||||| ||||||||||| || |||||||||||    
T  33049132 tgaaaatcacatttttagtacatatttgaacataaattacagaaggttatctcctt 33049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 314 - 445
Target Start/End: Original strand, 28146949 - 28147074
Alignment:
Q  314 cgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataat 413  Q
    |||||||||||||||||| |||||  |||||||||  |||||||||||||||||     ||| |||||||| |||||||||||||||||||||||||||     
T  28146949 cgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaa-----aatcatatttttagtacatatttgatcataaattacataa- 28147042  T
Q  414 gttatctccttatctagtttagaactccaaat 445  Q
    |||||||||||||||| ||||||| |||||||    
T  28147043 gttatctccttatctaatttagaattccaaat 28147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 305 - 445
Target Start/End: Complemental strand, 38412081 - 38411946
Alignment:
Q  305 aaagaatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaa 404  Q
    ||||||||||||||||||||||||||||  |||  | |||| ||  ||||| |||||||||||     ||| ||||||||  |||||| ||||| |||||    
T  38412081 aaagaatgtcgttcatgacaatagacaccaaatctgaatatcttttcaattaagatagatgaa-----aatcatatttttactacatacttgattataaa 38411987  T
Q  405 ttacataatgttatctccttatctagtttagaactccaaat 445  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  38411986 ttacataatgttatttccttatctagtttagaactccaaat 38411946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 315 - 445
Target Start/End: Complemental strand, 55606448 - 55606324
Alignment:
Q  315 gttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatg 414  Q
    |||||||||||||||||  |||| |  |||||||  ||||||| |||||||||     |||||||||||| ||||||||||||||||||||||||||| |    
T  55606448 gttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaa-----aattatatttttagtacatatttgatcataaattacataa-g 55606355  T
Q  415 ttatctccttatctagtttagaactccaaat 445  Q
    |||| ||||||| ||||||||||||||||||    
T  55606354 ttatttccttatatagtttagaactccaaat 55606324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 434
Target Start/End: Original strand, 11440550 - 11440670
Alignment:
Q  309 aatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattac 408  Q
    |||||| |||||||||||||||||| | | |||||| |||  ||||| |||||||||||     ||| |||||||| |||||||||||||||||||||||    
T  11440550 aatgtcattcatgacaatagacacatagtccggataatttttcaattaagatagatgaa-----aatcatatttttagtacatatttgatcataaattac 11440644  T
Q  409 ataatgttatctccttatctagttta 434  Q
    |||||||||||| ||||| |||||||    
T  11440645 ataatgttatcttcttatatagttta 11440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 13198275 - 13198158
Alignment:
Q  322 acaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatgttatctc 421  Q
    |||| ||||| ||||| ||||||||||  ||||||||||| |     ||||||| ||||| || || |||||||||||||||||||||||| ||||||||    
T  13198275 acaaaagacatagaatccggatattttttcaattgagataca-----tgaaaatcatattcttagtgcatatttgatcataaattacataa-gttatctc 13198182  T
Q  422 cttatctagtttagaactccaaat 445  Q
    |||||||| |||||||||||||||    
T  13198181 cttatctaatttagaactccaaat 13198158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 438
Target Start/End: Original strand, 25967966 - 25968084
Alignment:
Q  316 ttcatgacaatagacacagaattcggatattttcc--caattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataat 413  Q
    |||||||||| ||||| ||||||||||||||||    ||||||| ||||||||      ||| |||||||||||||||||||||| |||||||||||||     
T  25967966 ttcatgacaacagacatagaattcggatattttttttcaattgatatagatgat-----aatcatatttttggtacatatttgataataaattacataa- 25968059  T
Q  414 gttatctccttatctagtttagaac 438  Q
    ||||||| |||||||||||||||||    
T  25968060 gttatcttcttatctagtttagaac 25968084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 46308488 - 46308430
Alignment:
Q  386 gtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  46308488 gtacatatttgatcataaattacataa-gttatctccttagttagtttagaactctaaat 46308430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 315 - 434
Target Start/End: Complemental strand, 32617771 - 32617658
Alignment:
Q  315 gttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatg 414  Q
    ||||||||||||||||| ||||| ||| ||||||  |||||||||||||||||     ||| |||||||| ||||||||||||||||||||||||||| |    
T  32617771 gttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaa-----aatcatatttttagtacatatttgatcataaattacataa-g 32617678  T
Q  415 ttatctccttatctagttta 434  Q
    ||||||||||||||||||||    
T  32617677 ttatctccttatctagttta 32617658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 310 - 442
Target Start/End: Original strand, 34664741 - 34664867
Alignment:
Q  310 atgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattaca 409  Q
    |||||||||||||||||||||| |||| | ||||||| |  |||||||||||||||||     ||| ||||||| | ||| |||||||||||||||||||    
T  34664741 atgtcgttcatgacaatagacatagaaattggatattgtttcaattgagatagatgaa-----aatcatattttag-tacgtatttgatcataaattaca 34664834  T
Q  410 taatgttatctccttatctagtttagaactcca 442  Q
    ||| ||||||| |||||||||||||||||||||    
T  34664835 taacgttatcttcttatctagtttagaactcca 34664867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 12990549 - 12990606
Alignment:
Q  387 tacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  12990549 tacatatttgatcataaattacataat-ttatctccttatctagtttagaacttcaaat 12990606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 24699993 - 24699887
Alignment:
Q  320 tgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatgttatc 419  Q
    ||||||||||| || ||  ||||||||||  |||||||||||||||||     |||||||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24699993 tgacaatagacccaaaacccggatattttttcaattgagatagatgaa-----aattatatttttcgtatatatttgataatatattacataatgttatc 24699899  T
Q  420 tccttatctagt 431  Q
    |  |||||||||    
T  24699898 tttttatctagt 24699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 445
Target Start/End: Original strand, 9457578 - 9457709
Alignment:
Q  309 aatgtcgttcatgacaatagacacagaattcggatattttcc-caattgagatagatgaattgaaaattatatttttggtacatatttgatcataaatta 407  Q
    |||| |||||||||||||||||| ||||| | ||||||||   |||||||||||||| ||     ||| ||||||||| ||||||| |||||||||||||    
T  9457578 aatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaa-----aatcatatttttgatacatatctgatcataaatta 9457672  T
Q  408 cataatgttatctccttatctagtttagaactccaaat 445  Q
    | | | |||||||||||| || ||||||||||| ||||    
T  9457673 c-tcaagttatctccttaccttgtttagaactcaaaat 9457709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 445
Target Start/End: Original strand, 9461675 - 9461806
Alignment:
Q  309 aatgtcgttcatgacaatagacacagaattcggatattttcc-caattgagatagatgaattgaaaattatatttttggtacatatttgatcataaatta 407  Q
    |||| |||||||||||||||||| ||||| | ||||||||   |||||||||||||| ||     ||| ||||||||| ||||||| |||||||||||||    
T  9461675 aatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaa-----aatcatatttttgatacatatctgatcataaatta 9461769  T
Q  408 cataatgttatctccttatctagtttagaactccaaat 445  Q
    | | | |||||||||||| || ||||||||||| ||||    
T  9461770 c-tcaagttatctccttaccttgtttagaactcaaaat 9461806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 445
Target Start/End: Complemental strand, 11783637 - 11783484
Alignment:
Q  287 aaaccctgttacggccacaaagaatgtcgttcatgacaatagacacagaattcggatattttcc-caattgagatagatgaattgaaaattatatttttg 385  Q
    |||| ||||||||||| |||| |||| | |||||| ||||||| | ||| | ||||||||||   |||||||||||||||||     ||| ||||||||     
T  11783637 aaacactgttacggccgcaaa-aatgcctttcatggcaatagaaatagactccggatatttttttcaattgagatagatgaa-----aatcatattttta 11783544  T
Q  386 gtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  11783543 gtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaat 11783484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 437
Target Start/End: Original strand, 7299054 - 7299192
Alignment:
Q  295 ttacggccacaaagaatgtcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatt 394  Q
    |||||||| |||| |||| ||||||||||| |||| ||| ||| ||||||||||  |||||||||||   ||  ||||||  |||||||  |||||||||    
T  7299054 ttacggccgcaaaaaatgccgttcatgacactagagacaaaatccggatattttttcaattgagatac--ga--tgaaaaccatattttaagtacatatt 7299149  T
Q  395 tgatcataaattacataatgttatctccttatctagtttagaa 437  Q
    | ||||||||||||||||||||||||||||||||| |||||||    
T  7299150 taatcataaattacataatgttatctccttatctactttagaa 7299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 45810728 - 45810817
Alignment:
Q  445 taatgagacaaaccttgaatagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatat 534  Q
    ||||||||||||||| | ||||||| ||||  | |||||||||||| ||||||||||||||||||| ||| |||||||| || |||||||    
T  45810728 taatgagacaaacctcggatagttgaatgcggagaaactccaaattcgaaagtgctttcatcggaaaatagcaataacagatagtaatat 45810817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 45810565 - 45810621
Alignment:
Q  17 atatcccaatcatagaggagcaccaaatgagtcaaattatggaatgtaggaaagtca 73  Q
    |||||||||||||||  || |||||||||||||||||||| ||||||||||||||||    
T  45810565 atatcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtca 45810621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 19596590 - 19596541
Alignment:
Q  371 aaaattatatttttggtacatatttgatcataaattacataatgttatct 420  Q
    ||||| |||||||| ||||| |||||| ||||| ||||||||||||||||    
T  19596590 aaaatcatatttttagtacaaatttgaacataagttacataatgttatct 19596541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 21926588 - 21926543
Alignment:
Q  369 tgaaaattatatttttggtacatatttgatcataaattacataatg 414  Q
    ||||||| |||||||  |||||||||| ||||||||||||||||||    
T  21926588 tgaaaatcatattttcagtacatatttaatcataaattacataatg 21926543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 315 - 446
Target Start/End: Complemental strand, 39426292 - 39426166
Alignment:
Q  315 gttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatat-ttttggtacatatttgatcataaattacataat 413  Q
    ||||||||||||||||| ||||| |  |||||||  ||||| |||||||||||     ||| |||| |||| ||||||||||||||||||||||||||||    
T  39426292 gttcatgacaatagacatagaatccaaatattttttcaattaagatagatgaa-----aatcatatattttagtacatatttgatcataaattacataat 39426198  T
Q  414 gttatctccttatctagtttagaactccaaata 446  Q
    || |||||||||| |||||||||| ||||||||    
T  39426197 gtcatctccttatatagtttagaa-tccaaata 39426166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 438
Target Start/End: Complemental strand, 22927270 - 22927149
Alignment:
Q  313 tcgttcatgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacata--tttgatcataaattacat 410  Q
    ||||||||||||||||||| | ||| ||||||||||  |||||||||||||||||     ||| |||||||| ||||| |  ||||||||||||| ||||    
T  22927270 tcgttcatgacaatagacataaaatccggatattttttcaattgagatagatgaa-----aatcatattttttgtacacacatttgatcataaatcacat 22927176  T
Q  411 aatgttatctccttatctagtttagaac 438  Q
    | ||||||||| || |||||||||||||    
T  22927175 a-tgttatctcattgtctagtttagaac 22927149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 437
Target Start/End: Complemental strand, 13424835 - 13424721
Alignment:
Q  318 catgacaatagacacagaattcggatattttcccaattgagatagatgaattgaaaattatatttttggtacatatttgatcataaattacataatgtta 417  Q
    ||||||| |||||| ||||| ||||||||||  ||||||| ||| |||||     ||| |||||||| |||||||||||||||||||| || ||| ||||    
T  13424835 catgacagtagacatagaatccggatattttttcaattgaaataaatgaa-----aataatatttttagtacatatttgatcataaatcacgtaa-gtta 13424742  T
Q  418 tctcctt-atctagtttagaa 437  Q
    ||||||| ||||| |||||||    
T  13424741 tctccttaatctattttagaa 13424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 41283518 - 41283582
Alignment:
Q  379 atttttggtacatatttgatcataaattacataatgttatctccttatctagtttagaactccaaat 445  Q
    |||||| ||||| || ||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  41283518 atttttagtacaaatctgatcataaatta-ataa-gttatctccttatctagtttagaacttcaaat 41283582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 412
Target Start/End: Complemental strand, 16341619 - 16341522
Alignment:
Q  314 cgttcatgacaatagacacagaattcggatattttcc--caattgagatagatgaattgaaaattatatttttggtacatatttgatc--ataaattaca 409  Q
    |||||||||||||||||| ||||| ||||||||||    |||||||||||||||||     ||  |||||||| ||||||||||||||  ||||||||||    
T  16341619 cgttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaa-----aaacatatttttagtacatatttgatcatataaattaca 16341525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 36198931 - 36198875
Alignment:
Q  463 atagttgtatgcttaaaaactccaaatttgaaagtgctttcatcggaatataacaat 519  Q
    |||||||||| |||| ||||||| ||||  ||||||||||||| ||||||| |||||    
T  36198931 atagttgtattcttagaaactccgaattaaaaagtgctttcattggaatatcacaat 36198875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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